SummaryRMgm-5629
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*RMgm-5629| Successful modification | The parasite was generated by the genetic modification |
| The mutant contains the following genetic modification(s) | Gene disruption, Gene disruption |
| Reference (PubMed-PMID number) |
Reference 1 (PMID number) : 39424860 |
| MR4 number | |
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| Parent parasite used to introduce the genetic modification | |
| Rodent Malaria Parasite | P. berghei |
| Parent strain/line | P. berghei ANKA |
| Name parent line/clone | RMgm-5628 |
| Other information parent line | In the mutant RMgm-5628 the scd-gene has been deleted and does not contain a drug-selectable marker |
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| The mutant parasite was generated by | |
| Name PI/Researcher | Mishra A, Mishra S |
| Name Group/Department | Division of Molecular Microbiology and Immunology |
| Name Institute | CSIR-Central Drug Research Institute |
| City | Lucknow |
| Country | India |
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| Name of the mutant parasite | |
| RMgm number | RMgm-5629 |
| Principal name | Scd/Scot1 KO |
| Alternative name | |
| Standardized name | |
| Is the mutant parasite cloned after genetic modification | Yes |
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| Phenotype | |
| Asexual blood stage | Not different from wild type |
| Gametocyte/Gamete | Not different from wild type |
| Fertilization and ookinete | Not different from wild type |
| Oocyst | Not different from wild type |
| Sporozoite | Not different from wild type |
| Liver stage | Scd/Scot1 KO sporozoites infect the liver but fail to establish blood-stage infections in mice. |
| Additional remarks phenotype | Mutant/mutation |
Disrupted: Mutant parasite with a disrupted gene| top of page | |||||||||||||||||||||||||
| Details of the target gene | |||||||||||||||||||||||||
| Gene Model of Rodent Parasite | PBANKA_1110700 | ||||||||||||||||||||||||
| Gene Model P. falciparum ortholog | PF3D7_0511200 | ||||||||||||||||||||||||
| Gene product | Stearoyl-CoA desaturase | ||||||||||||||||||||||||
| Gene product: Alternative name | Scd | ||||||||||||||||||||||||
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| Details of the genetic modification | |||||||||||||||||||||||||
| Inducable system used | No | ||||||||||||||||||||||||
| Additional remarks inducable system | |||||||||||||||||||||||||
| Type of plasmid/construct used | (Linear) plasmid double cross-over | ||||||||||||||||||||||||
| PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||||||||
| Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||||||||
| Plasmid/construct map | |||||||||||||||||||||||||
| Plasmid/construct sequence | |||||||||||||||||||||||||
| Restriction sites to linearize plasmid | |||||||||||||||||||||||||
| Partial or complete disruption of the gene | Complete | ||||||||||||||||||||||||
| Additional remarks partial/complete disruption | |||||||||||||||||||||||||
| Selectable marker used to select the mutant parasite | No selectable marker | ||||||||||||||||||||||||
| Promoter of the selectable marker | No | ||||||||||||||||||||||||
| Selection (positive) procedure | No | ||||||||||||||||||||||||
| Selection (negative) procedure | 5-fluorocytosine (5-FC) | ||||||||||||||||||||||||
| Additional remarks genetic modification | The Scd KO marker free (MF) parasite line (RMgm-5628) was generated by transfecting Scd KO schizonts of mutant RMgm-5550 with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette. For this purpose, the Scd targeting cassette of mutant RMgm-5550 was digested with EcoRV/NotI and religated after the GFP and hDHFR:yFCU cassettes were removed. The Scd and Scot1 double-KO (Scd/Scot1 KO) parasites were generated via double crossover homologous recombination. First the Scd KO marker free (MF) parasite line (RMGM-5628) was generated by transfecting Scd KO schizonts of mutant RMgm-5550 with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette. Next, the Scd KO (MF) schizonts of mutant RMgm-5628 were transfected with a Scot1 gene-deletion construct (see mutant RMgm-5587). | ||||||||||||||||||||||||
| Additional remarks selection procedure | |||||||||||||||||||||||||
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Primer information: Primers used for amplification of the target sequences
![]() Primer information: Primers used for amplification of the target sequences
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Disrupted: Mutant parasite with a disrupted gene| top of page | |||||||||||||||||||||||||
| Details of the target gene | |||||||||||||||||||||||||
| Gene Model of Rodent Parasite | PBANKA_1411000 | ||||||||||||||||||||||||
| Gene Model P. falciparum ortholog | PF3D7_1312500 | ||||||||||||||||||||||||
| Gene product | conserved Plasmodium protein, unknown function | ||||||||||||||||||||||||
| Gene product: Alternative name | Scot1; Sporozoite Conserved Orthologous Transcript 1 | ||||||||||||||||||||||||
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| Details of the genetic modification | |||||||||||||||||||||||||
| Inducable system used | No | ||||||||||||||||||||||||
| Additional remarks inducable system | |||||||||||||||||||||||||
| Type of plasmid/construct used | (Linear) plasmid double cross-over | ||||||||||||||||||||||||
| PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||||||||
| Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||||||||
| Plasmid/construct map | |||||||||||||||||||||||||
| Plasmid/construct sequence | |||||||||||||||||||||||||
| Restriction sites to linearize plasmid | |||||||||||||||||||||||||
| Partial or complete disruption of the gene | Complete | ||||||||||||||||||||||||
| Additional remarks partial/complete disruption | |||||||||||||||||||||||||
| Selectable marker used to select the mutant parasite | hdhfr/yfcu | ||||||||||||||||||||||||
| Promoter of the selectable marker | eef1a | ||||||||||||||||||||||||
| Selection (positive) procedure | pyrimethamine | ||||||||||||||||||||||||
| Selection (negative) procedure | No | ||||||||||||||||||||||||
| Additional remarks genetic modification | The Scd and Scot1 double-KO (Scd/Scot1 KO) parasites were generated via double crossover homologous recombination. First the Scd KO marker free (MF) parasite line (RMGM-5628) was generated by transfecting Scd KO schizonts of mutant RMgm-5550 with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette. Next, the Scd KO (MF) schizonts of mutant RMgm-5628 were transfected with a Scot1 gene-deletion construct (see mutant RMgm-5587). | ||||||||||||||||||||||||
| Additional remarks selection procedure | |||||||||||||||||||||||||
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Primer information: Primers used for amplification of the target sequences
![]() Primer information: Primers used for amplification of the target sequences
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