RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-5629
Malaria parasiteP. berghei
Genotype
DisruptedGene model (rodent): PBANKA_1110700; Gene model (P.falciparum): PF3D7_0511200; Gene product: Stearoyl-CoA desaturase (Scd)
DisruptedGene model (rodent): PBANKA_1411000; Gene model (P.falciparum): PF3D7_1312500; Gene product: conserved Plasmodium protein, unknown function (Scot1; Sporozoite Conserved Orthologous Transcript 1)
Phenotype Liver stage;
Last modified: 6 April 2025, 10:34
  *RMgm-5629
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene disruption, Gene disruption
Reference (PubMed-PMID number) Reference 1 (PMID number) : 39424860
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone RMgm-5628
Other information parent lineIn the mutant RMgm-5628 the scd-gene has been deleted and does not contain a drug-selectable marker
The mutant parasite was generated by
Name PI/ResearcherMishra A, Mishra S
Name Group/DepartmentDivision of Molecular Microbiology and Immunology
Name InstituteCSIR-Central Drug Research Institute
CityLucknow
CountryIndia
Name of the mutant parasite
RMgm numberRMgm-5629
Principal nameScd/Scot1 KO
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageScd/Scot1 KO sporozoites infect the liver but fail to establish blood-stage infections in mice.
Additional remarks phenotype

Mutant/mutation
The mutant lacks expression of both Scd and Scot1.
The Scd and Scot1 double-KO (Scd/Scot1 KO) parasites were generated via double crossover homologous recombination. First the Scd KO marker free (MF) parasite line (RMgm-5628) was generated by transfecting Scd KO schizonts of mutant RMgm-5550 with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette, resulting in mutant RMgm-5628. Next, the Scd KO (MF) schizonts of mutant RMgm-5628 were transfected with a Scot1 gene-deletion construct (see mutant RMgm-RMgm-5587).

Protein (function)
SCD:
The malaria parasite can modify fatty acids, and stearoyl-CoA Δ9-desaturase (Scd) is an enzyme that catalyzes the synthesis of oleic acid by desaturation of stearic acid. Plasmodium parasites can modify de novo synthesized or scavenged fatty acids into long unsaturated fatty acids. An endoplasmic reticulum (ER)-localized stearoyl-CoA desaturase (Scd) was identified in P. falciparum that catalyzes the formation of oleic acid from stearic acid by the insertion of a cis double bond at the Δ9 position of fatty acyl-CoAs. See mutant RMgm-5550 for a more detailed analysis of the phenotype of mutant parasites lacking expression of SCD1.
SCOT1:
The Scot1 (micronemal) protein lacks a signal sequence and transmembrane domain.
See mutant RMgm-5587 for a more detailed analysis of the phenotype of mutant parasites lacking expression of SCOT1

Phenotype
Scd/Scot1 KO sporozoites infect the liver but fail to establish blood-stage infections in mice.
Evidence is presented for the following: the Scd/Scot1 KO and WT GFP parasites were indistinguishable during blood, mosquito and early liver stage development. Scd/Scot1 KO liver-stage schizonts exhibited an abnormal apicoplast biogenesis and nuclear division phenotype, failed to form hepatic merozoites, and exhibited late liver-stage arrest.
See mutant RMgm-5550 for a more detailed analysis of the phenotype of mutant parasites lacking expression of SCD1.
See mutant RMgm-5587 for a more detailed analysis of the phenotype of mutant parasites lacking expression of SCOT1

Additional information
To overcome the rare breakthrough infection in mice inoculated with higher doses of Scd ko (RMgm-5550) or Scot1 KO (RMgm-5587) sporozoites, a mutant with dual gene deletion (Scd/Scot1 KO; RMgm-5629) was generated.
First the Scd KO marker free (MF) parasite line (RMgm-5628) was generated by transfecting Scd KO schizonts of mutant RMgm-5550 with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette. Next, the Scd KO (MF) schizonts were transfected with a Scot1 gene-deletion construct (see mutant RMgm-5587).

From the Abstract:
'We previously generated two late liver-stage-arresting GAPs by deleting the stearoyl-CoA desaturase (Scd) or sporozoite conserved orthologous transcript 1 (Scot1) genes in Plasmodium berghei. Immunization with Scd or Scot1 GAP conferred complete protection against a sporozoite challenge. In a safety study, we observed rare breakthrough blood-stage infections in mice inoculated with high doses of sporozoites, indicating that both GAPs were incompletely attenuated. In this study, we generated a Scd/Scot1 GAP by dual gene deletion. This resulted in complete attenuation of the parasites in the liver and did not transition to blood-stage infection despite a high-dose sporozoite challenge. The Scd/Scot1 KO and WT GFP parasites were indistinguishable during blood, mosquito and early liver stage development. Moreover, Scd/Scot1 KO liver-stage schizonts exhibited an abnormal apicoplast biogenesis and nuclear division phenotype, failed to form hepatic merozoites, and exhibited late liver-stage arrest'.

Other mutants


  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1110700
Gene Model P. falciparum ortholog PF3D7_0511200
Gene productStearoyl-CoA desaturase
Gene product: Alternative nameScd
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct used(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Partial or complete disruption of the geneComplete
Additional remarks partial/complete disruption
Selectable marker used to select the mutant parasiteNo selectable marker
Promoter of the selectable markerNo
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationThe Scd KO marker free (MF) parasite line (RMgm-5628) was generated by transfecting Scd KO schizonts of mutant RMgm-5550 with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette.
For this purpose, the Scd targeting cassette of mutant RMgm-5550 was digested with EcoRV/NotI and religated after the GFP and hDHFR:yFCU cassettes were removed.

The Scd and Scot1 double-KO (Scd/Scot1 KO) parasites were generated via double crossover homologous recombination. First the Scd KO marker free (MF) parasite line (RMGM-5628) was generated by transfecting Scd KO schizonts of mutant RMgm-5550 with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette. Next, the Scd KO (MF) schizonts of mutant RMgm-5628 were transfected with a Scot1 gene-deletion construct (see mutant RMgm-5587).
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1411000
Gene Model P. falciparum ortholog PF3D7_1312500
Gene productconserved Plasmodium protein, unknown function
Gene product: Alternative nameScot1; Sporozoite Conserved Orthologous Transcript 1
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct used(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Partial or complete disruption of the geneComplete
Additional remarks partial/complete disruption
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe Scd and Scot1 double-KO (Scd/Scot1 KO) parasites were generated via double crossover homologous recombination. First the Scd KO marker free (MF) parasite line (RMGM-5628) was generated by transfecting Scd KO schizonts of mutant RMgm-5550 with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette. Next, the Scd KO (MF) schizonts of mutant RMgm-5628 were transfected with a Scot1 gene-deletion construct (see mutant RMgm-5587).
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6