RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-5628
Malaria parasiteP. berghei
Genotype
DisruptedGene model (rodent): PBANKA_1110700; Gene model (P.falciparum): PF3D7_0511200; Gene product: Stearoyl-CoA desaturase (Scd)
Phenotype Liver stage;
Last modified: 31 March 2025, 10:51
  *RMgm-5628
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene disruption
Reference (PubMed-PMID number) Reference 1 (PMID number) : 39424860
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone RMgm-5550
Other information parent lineIn the mutant RMgm-5550 the scd-gene has been deleted and contains the hdhfr/yfcu drug-selectable marker
The mutant parasite was generated by
Name PI/ResearcherMishra A, Mishra S
Name Group/DepartmentDivision of Molecular Microbiology and Immunology
Name InstituteCSIR-Central Drug Research Institute
CityLucknow
CountryIndia
Name of the mutant parasite
RMgm numberRMgm-5628
Principal nameScd KO marker free (MF)
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageScd KO MF sporozoites infect the liver but fail to establish blood-stage infections in mice (only rare breakthrough infections seen in mice at higher sporozoite doses).
Additional remarks phenotype

Mutant/mutation
The mutant lacks expression of Scd and and lacks a drug-selectable marker.
To generate a Scd KO drug-selectable marker free (MF) parasite line, Scd KO schizonts of mutant RMgm-5550 were transfected with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette.

Protein (function)
The malaria parasite can modify fatty acids, and stearoyl-CoA Δ9-desaturase (Scd) is an enzyme that catalyzes the synthesis of oleic acid by desaturation of stearic acid. Plasmodium parasites can modify de novo synthesized or scavenged fatty acids into long unsaturated fatty acids. An endoplasmic reticulum (ER)-localized stearoyl-CoA desaturase (Scd) was identified in P. falciparum that catalyzes the formation of oleic acid from stearic acid by the insertion of a cis double bond at the Δ9 position of fatty acyl-CoAs.

Phenotype
Scd KO sporozoites infect the liver but fail to establish blood-stage infections in mice.
Rare breakthrough infections in mice are only observed after infecting mice with higher sporozoite doses.
See mutant RMgm-5550 for a more detailed analysis of the phenotype of mutant parasites lacking expression of SCD1.

Additional information
To overcome the rare breakthrough infection in mice inoculated with higher doses of Scd ko (RMgm-5550) or Scot1 KO (RMgm-5587) sporozoites, a mutant with dual gene deletion (Scd/Scot1 KO; RMgm-5629) was generated.
First the Scd KO marker free (MF) parasite line (RMgm-5628) was generated by transfecting Scd KO schizonts of mutant RMgm-5550 with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette. Next, the Scd KO (MF) schizonts were transfected with a Scot1 gene-deletion construct (see mutant RMgm-5587).

Other mutants


  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1110700
Gene Model P. falciparum ortholog PF3D7_0511200
Gene productStearoyl-CoA desaturase
Gene product: Alternative nameScd
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct used(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Partial or complete disruption of the geneComplete
Additional remarks partial/complete disruption
Selectable marker used to select the mutant parasiteNo selectable marker
Promoter of the selectable markerNo
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationThe Scd KO marker free (MF) parasite line (RMgm-5628) was generated by transfecting Scd KO schizonts of mutant RMgm-5550 with the EcoRV/NotI-digested Scd targeting cassette to remove the hdhfr/yfcu drug-selectable marker cassette.
For this purpose, the Scd targeting cassette of mutant RMgm-5550 was digested with EcoRV/NotI and religated after the GFP and hDHFR:yFCU cassettes were removed.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6