RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-928
Malaria parasiteP. berghei
Genotype
Transgene
Transgene not Plasmodium: mCherry
Promoter: Gene model: PBANKA_0711900; Gene model (P.falciparum): PF3D7_0818900; Gene product: heat shock protein 70 (HSP70)
3'UTR: Gene model: PBANKA_0711900; Gene product: heat shock protein 70 (HSP70)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Phenotype Asexual bloodstage; Oocyst; Sporozoite; Liver stage;
Last modified: 21 March 2015, 23:39
  *RMgm-928
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 25786000
Reference 2 (PMID number) : 24509910
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone RMgm-687
Other information parent lineGIMO-PbANKA (RMgm-687) contains as a selectable marker (SM) the fusion gene of hdhfr (human dihydrofolate reductase; positive SM) and yfcu (yeast cytosine deaminase and uridyl phosphoribosyl transferase; negative SM) stably integrated into the 230p locus (PBANKA_030600) through double cross-over recombination. The SM is under control of the P. berghei eef1α promoter. This reference line of P. berghei ANKA is used for rapid introduction of transgenes free of drug-resistance genes (RMgm-687; PubMed: PMID: 22216235).
The mutant parasite was generated by
Name PI/ResearcherT. Annoura; S.M. Khan; C.J. Janse
Name Group/DepartmentLeiden Malaria Research Group
Name InstituteLeiden University Medical Center (LUMC)
CityLeiden
CountryThe Netherlands
Name of the mutant parasite
RMgm numberRMgm-928
Principal name1804cl1
Alternative namemCherry(hsp70)
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stage(High) mCherry expression in blood stages
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
Oocyst(High) mCherry expression in oocysts
Sporozoite(High) mCherry expression in sporozoites
Liver stage(High) mCherry expression in liver stages
Additional remarks phenotype

Mutant/mutation
The mutant expresses mCherry under the control of the  P. berghei hsp70 promoter. The mutant does not contain a drug-selectable marker.

The mutant has been generated and selected using the GIMO transfection method ('gene insertion/marker out') of transfection of a GIMO mother line that contains the hdhfr::yfcu selectable marker into the silent 230p locus.

The mutant has been generated in the reference line GIMOPbANKA (RMgm-687). This GIMO mother line is used for introduction of transgenes into the modified 230p locus through transfection with constructs that target the 230p locus. These constructs insert into the 230p locus (‘gene insertion’), thereby removing the hdhfr::yfcu selectable marker (‘marker out’) from the genome of the mother lines. Transgenic parasites that are marker-free are subsequently selected by applying negative drug selection using 5-FC. This selection procedure is performed in vivo in mice

Protein (function)

Phenotype
(High) mCherry expression in multiple life cycle stages throughout the life cycle.
This parasite mutant shows normal development of blood stages, oocysts, sporozoites and liver stages, comparable to wild type parasites.

Additional information

Supporting Figure S2
Generation of transgenic mCherryb9 and mCherryhsp70 expressing mCherry under the control of the b9 and hsp70 promoter, respectively

A. Schematic representation of the introduction of two mCherry-expression cassettes (pL1694 and pL1695) into the GIMOpbANKA. Construct pL1694 contains the hsp70 promoter (5’hsp70)-mCherry-3’hsp70 cassette and construct pL1695 the b9 promoter-mCherry-3’b9 cassette. These constructs are integrated into the modified P. berghei 230p locus containing the hdhfr::yfcu selectable marker cassette (hatched box) by double cross-over homologous recombination at the target regions (grey boxes). Negative (Neg) selection with 5-FC selects for the transgenic parasite line (1804cl1 and 1867) that have the mCherry-expression cassettes introduced into the 230p locus and the hdhfr::yfcu marker removed. Location of primers used for PCR analysis (see B) and sizes of PCR products are shown (see Table S6 for primer sequences). B. Diagnostic PCRs analysis confirms the correct integration of construct pL1694 in line 1804cl1 and construct pL1695 in line 1867 parasites shown by the absence of the hdhfr::yfcu marker and the presence of the mCherry gene: 5' integration PCR (5’; primers 5510- 6836 or 7166), 3' integration PCR (3’; primers 6841 or 7167-5511), amplification of mCherry (mC; primers 6663-5514) and the selectable marker (M; primers 4698-4699). Primer locations and product sizes are shown in A (primer sequences in Table S1 primer).


Other mutants


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene namemCherry
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
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Plasmid/construct sequence
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GGCCGCTATTATTGTTCTGTACTTCTTTTGTGAATAGTATTTTTACATATGTACTGTTAA
TTTTAAAATGTGGAATGCCACGAACATATTTTTTCGAACAAAATATATATTTTTTGTGTC
GAAATACATAAATTTGTGTACCTCCTTTTTGTTGTATATATGAAAAAGGAATAAAGTGAA
TGGAGTCGAATTACTCTAGACCCTACAACTTGTATATCACTACTTTATAATACTATAATA
TTATTATTAACATTAAACTATAGAAGAAATATCAACAATACTTATGTATTTGTTCAAACT
TTATCAGTATAGTTTGGTAATCGCATATCATATATTTGTTATGTGTAATATTTTATGAAT
ATGCGTCTTTTTTTTTAACTATAAATAATTCAAAATAAAATAACATAATTAACATTTGCA
AGCATAATTAAGATGATTACTTTCACATTTCATCCAAAGTGGAAAATGACCACCACATTT
GATCGAAGCTTTTACCACTTTTGATGCATTAGCTCTGAAATGTATACAAGCTTTCATTTG
TTAATGTTACAAAGGGAAGTTTTTATTTGGGGGCACATTAAAAGTGAAAAAATTAAAAGT
TAAAAAAGTTAAAAAATGATCGGTGTAGTTGGTCATATAGACATGTTGTTATGCAAGTCT
TTCAAAACGTTCCTCATAAAATAAAAGGAGGGATCTAGAGAGCTTTCAATTCTCCAAACG
GTATTATTGGTATTTTCCGGTACCGAGCTCGAATTCTCTTGAGCCCGTTAATGAAATAGA
TACAATTCATTCATGTTATATACATCTAGAACATAATCTGAATATGGTTCAAGTTAAATG
TCCAAAAATTATAAAAAGTGATGATATTTTTGATGGTAATACCATAATAGACACCAAGGT
AACATCACGAAGTAGTCAACAAAATAATTTTTATTTAGAAAATACAGATGTTGAACCAGA
AGAAATAGAGAAATATAAAAATATAGAATACATACCAGAAAACGATGAAGTAATGCATCT
AGACAAAAAAGAAAAGCTAGATGATATATTACCAGGTGTTATCATATTAGATAAAAATAA
AATGTTCAAAGAAAAAGGACATTTCACTTTTGTTACTCCATTAATTGTAGAAAAGGTATT
AATATTAAAAATATATTGTGATAATACTAAAACAATAATTAATAATATGAAAGGGAAAAA
AGGTATTACAGTAATAAGGATTTCTCAAAATACAACAAAAAATAAATTTTATGGATGTGA
CTTTTCAGGTAATTCTAAAAAAACATTTTACTATTCCAATGTTTATGATTTAGAAAAAAA
AAATGAGTTTTGTGAAATAGAATTAAAAGAAAATATAGTAGTTAGCTTAAATTGTCCAAC
TGGTAAAATTAATCCAAAAAATTGTTTTAGAAATGTATATATAAAAAGTAATATGAATGA
ACAAACAACCGAAAATATAGAAAATATATTTAACGAAATAAAAGTTATAGATGCAGATTA
TTTTATAAATAATTCATCAACCTTTTTGATGATTTCCAAAATTACAAAAAAAGAGTTTGA
TTTTTATTGTACATGTGAAGATTATAAAACCAAAAATATAGGAACAATATATATTAAAAA
TTATGAATATCTAGATTCAAAACCTAAATATAAAAATAAACAAATTTCCTATATAGATGT
AGTTCCATACCCGCGGGGAAAGGGCGAATTCACTGGCCGTCGTTTTACAACGTCGTGACT
GGGAAAACCCTGGCGTTACCCAACTTAATCGCCTTGCAGCACATCCCCCTTTCGCCAGCT
GGCGTAATAGCGAAGAGGCCCGCACCGATCGCCCTTCCCAACAGTTGCGCAGCCTGAATG
GCGAATGGCGCCTGATGCGGTATTTTCTCCTTACGCATCTGTGCGGTATTTCACACCGCA
TATGGTGCACTCTCAGTACAATCTGCTCTGATGCCGCATAGTTAAGCCAGCCCCGACACC
CGCCAACACCCGCTGACGCGCCCTGACGGGCTTGTCTGCTCCCGGCATCCGCTTACAGAC
AAGCTGTGACCGTCTCCGGGAGCTGCATGTGTCAGAGGTTTTCACCGTCATCACCGAAAC
GCGCGAGACGAAAGGGCCTCGTGATACGCCTATTTTTATAGGTTAATGTCATGATAATAA
TGGTTTCTTAGACGTCAGGTGGCACTTTTCGGGGAAATGTGCGCGGAACCCCTATTTGTT
TATTTTTCTAAATACATTCAAATATGTATCCGCTCATGAGACAATAACCCTGATAAATGC
TTCAATAATATTGAAAAAGGAAGAGTATGAGTATTCAACATTTCCGTGTCGCCCTTATTC
CCTTTTTTGCGGCATTTTGCCTTCCTGTTTTTGCTCACCCAGAAACGCTGGTGAAAGTAA
AAGATGCTGAAGATCAGTTGGGTGCACGAGTGGGTTACATCGAACTGGATCTCAACAGCG
GTAAGATCCTTGAGAGTTTTCGCCCCGAAGAACGTTTTCCAATGATGAGCACTTTTAAAG
TTCTGCTATGTGGCGCGGTATTATCCCGTATTGACGCCGGGCAAGAGCAACTCGGTCGCC
GCATACACTATTCTCAGAATGACTTGGTTGAGTACTCACCAGTCACAGAAAAGCATCTTA
CGGATGGCATGACAGTAAGAGAATTATGCAGTGCTGCCATAACCATGAGTGATAACACTG
CGGCCAACTTACTTCTGACAACGATCGGAGGACCGAAGGAGCTAACCGCTTTTTTGCACA
ACATGGGGGATCATGTAACTCGCCTTGATCGTTGGGAACCGGAGCTGAATGAAGCCATAC
CAAACGACGAGCGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTAT
TAACTGGCGAACTACTTACTCTAGCTTCCCGGCAACAATTAATAGACTGGATGGAGGCGG
ATAAAGTTGCAGGACCACTTCTGCGCTCGGCCCTTCCGGCTGGCTGGTTTATTGCTGATA
AATCTGGAGCCGGTGAGCGTGGGTCTCGCGGTATCATTGCAGCACTGGGGCCAGATGGTA
AGCCCTCCCGTATCGTAGTTATCTACACGACGGGGAGTCAGGCAACTATGGATGAACGAA
ATAGACAGATCGCTGAGATAGGTGCCTCACTGATTAAGCATTGGTAACTGTCAGACCAAG
TTTACTCATATATACTTTAGATTGATTTAAAACTTCATTTTTAATTTAAAAGGATCTAGG
TGAAGATCCTTTTTGATAATCTCATGACCAAAATCCCTTAACGTGAGTTTTCGTTCCACT
GAGCGTCAGACCCCGTAGAAAAGATCAAAGGATCTTCTTGAGATCCTTTTTTTCTGCGCG
TAATCTGCTGCTTGCAAACAAAAAAACCACCGCTACCAGCGGTGGTTTGTTTGCCGGATC
AAGAGCTACCAACTCTTTTTCCGAAGGTAACTGGCTTCAGCAGAGCGCAGATACCAAATA
CTGTCCTTCTAGTGTAGCCGTAGTTAGGCCACCACTTCAAGAACTCTGTAGCACCGCCTA
CATACCTCGCTCTGCTAATCCTGTTACCAGTGGCTGCTGCCAGTGGCGATAAGTCGTGTC
TTACCGGGTTGGACTCAAGACGATAGTTACCGGATAAGGCGCAGCGGTCGGGCTGAACGG
GGGGTTCGTGCACACAGCCCAGCTTGGAGCGAACGACCTACACCGAACTGAGATACCTAC
AGCGTGAGCATTGAGAAAGCGCCACGCTTCCCGAAGGGAGAAAGGCGGACAGGTATCCGG
TAAGCGGCAGGGTCGGAACAGGAGAGCGCACGAGGGAGCTTCCAGGGGGAAACGCCTGGT
ATCTTTATAGTCCTGTCGGGTTTCGCCACCTCTGACTTGAGCGTCGATTTTTGTGATGCT
CGTCAGGGGGGCGGAGCCTATGGAAAAACGCCAGCAACGCGGCCTTTTTACGGTTCCTGG
CCTTTTGCTGGCCTTTTGCTCACATGTTCTTTCCTGCGTTATCCCCTGATTCTGTGGATA
ACCGTATTACCGCCTTTGAGTGAGCTGATACCGCTCGCCGCAGCCGAACGACCGAGCGCA
GCGAGTCAGTGAGCGAGGAAGCGGAAGAGCGCCCAATACGCAAACCGCCTCTCCCCGCGC
GTTGGCCGATTCATTAATGCAGCTGGCACGACAGGTTTCCCGACTGGAAAGCGGGCAGTG
AGCGCAACGCAATTAATGTGAGTTAGCTCACTCATTAGGCACCCCAGGCTTTACACTTTA
TGCTTCCGGCTCGTATGTTGTGTGGAATTGTGAGCGGATAACAATTTCACACAGGAAACA
GCTATGACCATGATTACGCCAAGCTTCCGCGGGTATATGGTAAAGAACCTACTAACACAA
TAAAATATTTAAATAATGTATTTCCTATAAATAAATTTACAGATTTATTTTTTAATACAA
AAGATATAGATATACCAGAAATAAATGATCAGTTTAAAGGTTTTAAATTCTTTATGACAT
CATTTATAAATCATGGATCATATCCACTAACAATAGAATGTGGTGTAACAAATGGTGGAA
CTAGTTATAAAAGAGCAATTATTTTATTGCATGTTCGAACTGATTTAAAAGATAGACCAG
TTTCATTTTGTGATTTTCGAAAAGGAGAATTATATAATTATTTGAATGCTTATACTGAAG
GGGATGTATGCATAATAATTTCCAAATCAAATACAAGTTTTGGTTTTAGATGCCCAGTAA
ATACAAAAAAAATGCCAAAAAATTGTTTTACGCAAGTATATGAAAAAGGGTATCTAAATG
ACGCCAATAAAATTAATACTAAAAATGTTATTAACTATTCATTTGAAAATCCAGAATATG
CGCTAGCTGGTTYTAATTATACATTAACAAAATCGTATCAATTTGAATGTCATTGTGTAG
ATAAAGAAACAGAACAAATTGTAAAAACGGTTTTAGTCAAATATGTAAATGAAGATGAAA
TATATGATTATAATGATTTTCCAATGGTGAATCACAAACCTATTATTGCACATCCAAATA
AAACACATCAAGCTTGCATGCCGTAATATTTTGTTGGTGAGCTTAAAAACTTTTAATATT
GTTTGTGCAAAATTTTTGCTAAGAAAATAATTTTATGAGTCATATTAGAAGTTCATTGAA
TTTGTTATATAAAATAAATTTTATATTCTGCCTATTTTATGTACAACAAATTGCGGAATT
GTACATAATATAATATGAAAAATATATGGCTTTAAATTATAATTGCCAAATAAAATAGGG
AGGGGCCCCCCCCAAGCCCTCAAAGGGTGCATACTATGTTTATAATATATTATTATATAG
CATTATATTAGCATTATATATATTTGTTATTTTACAATACATTCATTTTGCGTGGGGCAA
TGCATTTGCGCTCTTTTTCAGTTCATATTTTTGCAAATAATTGCACTTTCGGAAATTTGA
AAAAATATAAAACCCATAAAAAGGTGGAATACAAAACATTTTTTGCATTTTCGAAGCATA
TAAATATGTATATATATTATGCATACTATATTATGACTATCCTTGCCAATAAAAAAAAAA
TATTATATAAAGGGGACCCCATATATAGGTATATATAATAGCTGCTTTAACTAAGGGGCT
AATAAATGGCCCCGTATTTTGTTTTTTTTATAGCTAATAATAAAAATAAAAAAATAAAAA
GTACGAACTTTAGTCCCATAAATTAAGAAGTATATATGCTTATAAAAAGGATATCAAATA
AATTAATGTTAACTCAAATAAATTAATTTTCATGCAAAAAAATATTTAAAAAAGAATATA
TATATTAAGAAAAATAATTATAAATATTATTTACATATATATACCATAATATATACCCCC
TTTTGATTATATATATATAATATTATATATTTTTCTTTAGAGAAAAAATAAATAGTGTTA
TTTCCTATTATATATCGTAGTTAATTTTAATAATTTACAATACACTATATTTCTTATTTT
ATATAAAATATATTTATAATTAATTTTTTTATATTATATGTATATATTTTAATTGCATTC
TCCTTTTTTAATAAAAATTTTACCCAATTGTTATAGAGCTTGTTATTATTATATAATAAC
AATATAAGAATATTTTTTATATAACATTAAAAAAAATTAACATATTTTTTATTTTTTTTA
AATATTTATTCCAATTTATTTTTAACGGTCAAATTAAAGAAATATATAGATATATATTTA
TTGCTTAAATTATAAGTATATGTTTTTTTAAAAAATTAAAGCCCAAAACATATTTCTTTG
TATTATATACATTTTTGCATTTTACACTATTTTGCCATAAGCACATTAAATATATATATA
TATGCTTGTAGCAAATTAATTAAATAAAATAATTACCAACATTATTATCCCAATAAATTA
CAATTACAATTAAAAAAAGGGATCCATGGTGAGCAAGGGCGAGGAGGATAACATGGCCAT
CATCAAGGAGTTCATGCGCTTCAAGGTGCACATGGAGGGCTCCGTGAACGGCCACGAGTT
CGAGATCGAGGGCGAGGGCGAGGGCCGCCCCTACGAGGGCACCCAGACCGCCAAGCTGAA
GGTGACCAAGGGTGGCCCCCTGCCCTTCGCCTGGGACATCCTGTCCCCTCAGTTCATGTA
CGGCTCCAAGGCCTACGTGAAGCACCCCGCCGACATCCCCGACTACTTGAAGCTGTCCTT
CCCCGAGGGCTTCAAGTGGGAGCGCGTGATGAACTTCGAGGACGGCGGCGTGGTGACCGT
GACCCAGGACTCCTCCCTGCAGGACGGCGAGTTCATCTACAAGGTGAAGCTGCGCGGCAC
CAACTTCCCCTCCGACGGCCCCGTAATGCAGAAGAAGACCATGGGCTGGGAGGCCTCCTC
CGAGCGGATGTACCCCGAGGACGGCGCCCTGAAGGGCGAGATCAAGCAGAGGCTGAAGCT
GAAGGACGGCGGCCACTACGACGCTGAGGTCAAGACCACCTACAAGGCCAAGAAGCCCGT
GCAGCTGCCCGGCGCCTACAACGTCAACATCAAGTTGGACATCACCTCCCACAACGAGGA
CTACACCATCGTGGAACAGTACGAACGCGCCGAGGGCCGCCACTCCACCGGCGGCATGGA
CGAGCTGTACAAGTAATCTAGAGCAATTTGC
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modification
Additional remarks selection procedureThis reporter mutant expressing mCherry does not contain a drug-selectable marker.
The mutant has been generated in the reference line GIMOPbANKA (RMgm-687). The GIMO mother line is used for introduction of transgenes into the modified 230p locus through transfection with constructs that target the 230p locus. These constructs insert into the 230p locus (‘gene insertion’), thereby removing the hdhfr::yfcu selectable marker (‘marker out’) from the genome of the mother lines. Transgenic parasites that are marker-free are subsequently selected by applying negative drug selection using 5-FC. This selection procedure is performed in vivo in mice.
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0711900
Gene Model P. falciparum ortholog PF3D7_0818900
Gene productheat shock protein 70
Gene product: Alternative nameHSP70
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1CCGGGGTACCGTAATATTTTGTTGGTGAGC
Additional information primer 16254 (Asp718); hsp70 promoter F
Sequence Primer 2gggGGATCCCTTTTTTTAATTGTAATTGTAATTTATTGG
Additional information primer 24213 (BamHI); hsp70 promoter R
3'-UTR
Gene Model of Parasite PBANKA_0711900
Gene productheat shock protein 70
Gene product: Alternative nameHSP70
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1gggACTAGTTATTATTGTTCTGTACTTCTTTTGTG
Additional information primer 14214 (SpeI); hsp70 3'UTR F
Sequence Primer 2gggGGTACCGGAAAATACCAATAATACCG
Additional information primer 24215 (Asp718); hsp70 3'UTR R
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4