RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-5236
Malaria parasiteP. berghei
Genotype
Transgene
Transgene Plasmodium: Gene model: Not available; Gene model (P.falciparum): Not available; Gene product: 'P. vivax like' csp (locus PVU09738; Accession U09738) (PvCSP, G10)
Promoter: Gene model: PBANKA_0501200; Gene model (P.falciparum): Not available; Gene product: early transcribed membrane protein up-regulated in infective sporozoites (ETRAMP10.3; UIS4)
3'UTR: Gene model: PBANKA_0501200; Gene product: early transcribed membrane protein up-regulated in infective sporozoites (ETRAMP10.3, UIS4)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Transgene
Transgene not Plasmodium: GFP-Luciferase
Promoter: Gene model: PBANKA_1133300; Gene model (P.falciparum): PF3D7_1357100; Gene product: elongation factor 1-alpha (eef1a)
3'UTR: Gene model: PBANKA_0719300; Gene product: bifunctional dihydrofolate reductase-thymidylate synthase, putative (dhfr/ts)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
PhenotypeNo phenotype has been described
Last modified: 2 September 2022, 17:40
  *RMgm-5236
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene, Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 34504134
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone GIMO-PbANKA (RMgm-687)
Other information parent lineGIMO-PbANKA (RMgm-687, 1596cl1) contains as a selectable marker (SM) the fusion gene of hdhfr (human dihydrofolate reductase; positive SM) and yfcu (yeast cytosine deaminase and uridyl phosphoribosyl transferase; negative SM) stably integrated into the 230p locus (PBANKA_030600) through double cross-over recombination. The SM is under control of the P. berghei eef1α promoter. This reference line of P. berghei ANKA line is used for rapid introduction of transgenes free of drug-resistance genes (PubMed: PMID: 22216235).
The mutant parasite was generated by
Name PI/ResearcherGiminez, AM, Reyes-Sandoval A
Name Group/DepartmentInstituto Politécnico Nacional, IPN
Name InstituteInstituto Politécnico Nacional, IPN
CityMexico City
CountryMexico
Name of the mutant parasite
RMgm numberRMgm-5236
Principal name2700 cl1
Alternative namePb-PvCSP-like G10
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageNot different from wild type
Additional remarks phenotype

Mutant/mutation
The mutant expresses the 'P. vivax like' CSP (G10; locus PVU09738; Accession U09738). The gene is introduced as an additional copy into the silent p230p locus under control of the sporozoite/liver stage promoter uis4 and expresses the reporter fusion protein GFP-Luciferase under control of the constitutive eef1a promoter

The mutant has been generated and selected using the GIMO transfection method ('gene insertion/marker out') of transfection of a GIMO mother line that contains the hdhfr::yfcu selectable marker into the silent 230p locus.

The mutant has been generated in the reference line GIMOPbANKA (RMgm-687). This GIMO mother line is used for introduction of transgenes into the modified 230p locus through transfection with constructs that target the 230p locus. These constructs insert into the 230p locus (‘gene insertion’), thereby removing the hdhfr::yfcu selectable marker (‘marker out’) from the genome of the mother lines. Transgenic parasites that are marker-free are subsequently selected by applying negative drug selection using 5-FC. This selection procedure is performed in vivo in mice

Protein (function)
The CS protein is the major protein on the surface of sporozoites and is critical for development of sporozoites within the oocysts and is involved in motility and invasion of both the salivary gland of the mosquito and the liver cells. The protein is also found on the oocyst plasma membrane and on the inner surface of the oocyst capsule. Specific motifs in CS are involved in sporozoite binding to mosquito salivary glands and in sporozoite attachment to heparan sulfate proteoglycans in the liver of the mammalian host. During substrate-dependent locomotion of sporozoites, CS is secreted at the sporozoite anterior pole, translocated along the sporozoite axis and released on the substrate at the sporozoite posterior pole. Following sporozoite invasion of hepatocytes, the CS is released in the host cell cytoplasm.

Phenotype
Both oocyst and sporozoite production in A. stephensi mosquitoes was comparable to wild-type P. berghei parasites. The infectivity of chimeric spz, as determined by the length of the prepatent period after intravenous injection of 1000 spz in BALB/c mice, was similar to that in mice infected with wild-type P. berghei spz.

The expression of the PvCSP-P. vivax-like protein in Pb-PvCSP-like G10 spz was determined by immunofluorescence analysis using sera from mice immunized with the recombinant proteins. The 3D11 antibody recognizing P. berghei CSP was used as a control. Pb-PvCSP-like G10 spz stained both with the antiserum and the 3D11 antibody, demonstrating the expression of both P. berghei CSP and PvCSP-P. vivax-like protein in spz of the Pb-PvCSP-like G10 line.

Additional information


Other mutant
 


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: Plasmodium
Gene Model of Parasite Not available
Gene Model P. falciparum ortholog Not available
Gene product'P. vivax like' csp (locus PVU09738; Accession U09738)
Gene product: Alternative namePvCSP, G10
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationThe PvCSP-P. vivax-like Gabon Clone G10 CDS (Locus PVU09738, Accession U09738) gene was introduced into the genome as an additional copy of the gene in the neutral 230p locus using the previously described ‘gene insertion/marker out’ (GIMO) technology and the standard GIMO DNA construct pL0043 to generate the chimeric P. berghei additional copy line. This construct contains 5’ and 3’ targeting sequences for the 230p locus, as well as a multiple-cloning site for the integration of transgene expression cassettes. This construct integrates transgenes by double crossover homologous recombination and replaces the positive–negative SM (human dihydrofolate reductase:: yeast cytosine deaminase and uridyl phosphoribosyl transferase (hdhfr::yfcu)) cassette with the transgene expression cassette. The expression cassette contained the PvCSP-P. vivax-like CDS flanked by the 5’ and 3’ promoter and transcription terminator sequences of the P. berghei uis4 gene (PBANKA_0501200), which were amplified from P. berghei ANKA WT genomic DNA. The coding sequence of the P. vivax CSP-like G10 gene (Locus PVU09738, Accession U09738) was ordered from GeneArt Gene Synthesis—Thermo Fisher Scientific. In addition, a reporter cassette containing GFP::luciferase30 driven by the constitutive P. berghei elongation factor 1 alpha (ef1α) promoter was also cloned into the transgene construct to generate the gene insertion construct pL2163 (PvCSP-Like G10@Pbuis4 + GFP::Luc@Pbeef1a_230p) targeting the neutral 230p locus on chromosome 3. The coding sequence and promoter region of the construct were confirmed by sequencing. The pL2163 construct was linearized by SacII restriction digestion and introduced into parasites of the GIMO motherline 1596cl1 using standard methods of GIMO transfection. Transfected parasites were selected in mice through the addition of 5-fluorocytosine (5-FC) to the drinking water, resulting in negative selection of parasites in which the SM in the 230p locus was replaced by the PvCSP-P. vivax-like expression/reporter cassette. The selected chimeric parasites were cloned using the limiting dilution method. Correct integration of the PvCSP-P. vivax-like coding sequence (under control of the Pbuis4 promoter) into the genome of clones of the chimeric line (Pb-PvCSP-like G10, 2700 cl1) was analyzed by performing a diagnostic PCR analysis of gDNA and Southern analysis of pulsed field gel (PFG)-separated chromosomes.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0501200
Gene Model P. falciparum ortholog Not available
Gene productearly transcribed membrane protein up-regulated in infective sporozoites
Gene product: Alternative nameETRAMP10.3; UIS4
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0501200
Gene productearly transcribed membrane protein up-regulated in infective sporozoites
Gene product: Alternative nameETRAMP10.3, UIS4
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP-Luciferase
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasiteNo selectable marker
Promoter of the selectable markerNo
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modification
Additional remarks selection procedureThis transgenic parasite does not contain a drug-selectable marker.
The mutant has been generated in the reference line GIMOPbANKA (RMgm-687). The GIMO mother line is used for introduction of transgenes into the modified 230p locus through transfection with constructs that target the 230p locus. These constructs insert into the 230p locus (‘gene insertion’), thereby removing the hdhfr::yfcu selectable marker (‘marker out’) from the genome of the mother lines. Transgenic parasites that are marker-free are subsequently selected by applying negative drug selection using 5-FC. This selection procedure is performed in vivo in mice.
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1133300
Gene Model P. falciparum ortholog PF3D7_1357100
Gene productelongation factor 1-alpha
Gene product: Alternative nameeef1a
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0719300
Gene productbifunctional dihydrofolate reductase-thymidylate synthase, putative
Gene product: Alternative namedhfr/ts
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4