SummaryRMgm-4601
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Successful modification | The parasite was generated by the genetic modification |
The mutant contains the following genetic modification(s) | Introduction of a transgene |
Reference (PubMed-PMID number) |
Reference 1 (PMID number) : 30941868 |
MR4 number | |
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Parent parasite used to introduce the genetic modification | |
Rodent Malaria Parasite | P. berghei |
Parent strain/line | P. berghei ANKA |
Name parent line/clone | 8417HP |
Other information parent line | |
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The mutant parasite was generated by | |
Name PI/Researcher | Pace T, Ponzi M, Olivieri A |
Name Group/Department | Dipartimento di Malattie Infettive |
Name Institute | Istituto Superiore di Sanità |
City | Rome |
Country | Italy |
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Name of the mutant parasite | |
RMgm number | RMgm-4601 |
Principal name | SUB1/prom1; SUB1/prom2; SUB1/prom3 |
Alternative name | |
Standardized name | |
Is the mutant parasite cloned after genetic modification | Yes |
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Phenotype | |
Asexual blood stage | The first two constructs, named SUB1/prom1 and SUB1/prom2, included the DNA sequence spanning the region between 1279 bp and either 25 bp or 450 bp upstream of the pbsub1 ATG, respectively including or excluding an intron present in the pbsub1 5’ UTR. The resulting transgenic parasite lines were both found to specifically display reporter gene expression in the cytoplasm of gametocytes, with no detectable expression in asexual blood stage parasites. We then generated a third construct, where a larger DNA segment, extending from 2385 bp to 450 bp upstream of the pbsub1 ATG was fused to gfp. In the obtained transgenic line, named SUB1/prom3, the reporter gene was expressed both in gametocytes and schizonts |
Gametocyte/Gamete | The first two constructs, named SUB1/prom1 and SUB1/prom2, included the DNA sequence spanning the region between 1279 bp and either 25 bp or 450 bp upstream of the pbsub1 ATG, respectively including or excluding an intron present in the pbsub1 5’ UTR. The resulting transgenic parasite lines were both found to specifically display reporter gene expression in the cytoplasm of gametocytes, with no detectable expression in asexual blood stage parasites. We then generated a third construct, where a larger DNA segment, extending from 2385 bp to 450 bp upstream of the pbsub1 ATG was fused to gfp. In the obtained transgenic line, named SUB1/prom3, the reporter gene was expressed both in gametocytes and schizonts. In all the SUB1/prom lines, the GFP fluorescence signal significantly increased in activated male gametocytes, indicating upregulation of pbsub1 gene expression during male gamete formation. |
Fertilization and ookinete | Not tested |
Oocyst | Not tested |
Sporozoite | Not tested |
Liver stage | Not tested |
Additional remarks phenotype | Mutant/mutation The first two constructs, named SUB1/prom1 and SUB1/prom2, included the DNA sequence spanning the region between 1279 bp and either 25 bp or 450 bp upstream of the pbsub1 ATG, respectively including or excluding an intron present in the pbsub1 5’ UTR. The resulting transgenic parasite lines were both found to specifically display reporter gene expression in the cytoplasm of gametocytes, with no detectable expression in asexual blood stage parasites. We then generated a third construct, where a larger DNA segment, extending from 2385 bp to 450 bp upstream of the pbsub1 ATG was fused to gfp. In the obtained transgenic line, named SUB1/prom3, the reporter gene was expressed both in gametocytes and schizonts Protein (function) Phenotype The first two constructs, named SUB1/prom1 and SUB1/prom2, included the DNA sequence spanning the region between 1279 bp and either 25 bp or 450 bp upstream of the pbsub1 ATG, respectively including or excluding an intron present in the pbsub1 5’ UTR. The resulting transgenic parasite lines were both found to specifically display reporter gene expression in the cytoplasm of gametocytes, with no detectable expression in asexual blood stage parasites. We then generated a third construct, where a larger DNA segment, extending from 2385 bp to 450 bp upstream of the pbsub1 ATG was fused to gfp. In the obtained transgenic line, named SUB1/prom3, the reporter gene was expressed both in gametocytes and schizonts These results suggested that the pbsub1 gene includes two distinct regulatory regions: one, closest to the ATG, that specifically drives gene expression in the sexual stages and another, further upstream, necessary to drive expression also in asexual stages. In all the SUB1/prom lines, the GFP fluorescence signal significantly increased in activated male gametocytes, indicating upregulation of pbsub1 gene expression during male gamete formation. |
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Type and details of transgene | |||||||||||||||||||
Is the transgene Plasmodium derived | Transgene: not Plasmodium | ||||||||||||||||||
Transgene name | GFP | ||||||||||||||||||
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Details of the genetic modification | |||||||||||||||||||
Inducable system used | No | ||||||||||||||||||
Additional remarks inducable system | |||||||||||||||||||
Type of plasmid/construct | (Linear) plasmid double cross-over | ||||||||||||||||||
PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||
Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||
Plasmid/construct map | |||||||||||||||||||
Plasmid/construct sequence | |||||||||||||||||||
Restriction sites to linearize plasmid | |||||||||||||||||||
Selectable marker used to select the mutant parasite | hdhfr/yfcu | ||||||||||||||||||
Promoter of the selectable marker | pbdhfr | ||||||||||||||||||
Selection (positive) procedure | pyrimethamine | ||||||||||||||||||
Selection (negative) procedure | No | ||||||||||||||||||
Additional remarks genetic modification | To produce the SUB1/prom constructs, the putative pbsub1 3’ UTR, spanning from -36 bp and +766 bp from the stop codon, was amplified by genomic DNA with the primer pair SUB1-3’UTR_for and SUB1-3’UTR_rev, digested with NarI/SacI and cloned in the plasmid pBAT-GFP, digested with the same enzymes. 2 putative pbsub1 promoter regions, respectively named SUB1-prom1 and SUB1-prom2, respectively of 830 bp (from -1279 bp and -450 bp from ATG) and 1956 bp (from -2385 bp to -450 bp from ATG, partially overlapping the EST of gene located upstream of sub1) were amplified by genomic DNA. The amplification products were respectively digested with SpeI/NdeI and SacII/NotI and cloned into the pBAT-GFP, containing the putative pbsub1 3’UTR, digested with the same enzymes. The obtained constructs were respectively named pSUB1-prom1 and pSUB1-prom2. We also generated a third construct, where a larger DNA segment, extending from 2385 bp to 450 bp upstream of the pbsub1 ATG was fused to gfp. The plasmids are integrated by double cross-over integration in a locus on P. berghei chromosome 6 between two hypothetical open reading frames (PBANKA_061210 and PBANKA_061220), both displaying only limited gene expression in the stages studied thus far. The integration of pBAT-GFP plasmid at this locus was designed to occur 1 kb 3' of PBANKA_061210 and 0.9 kb of PBANKA_260 061220. | ||||||||||||||||||
Additional remarks selection procedure | |||||||||||||||||||
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Other details transgene | |||||||||||||||||||
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Promoter | |||||||||||||||||||
Gene Model of Parasite | PBANKA_1107100 | ||||||||||||||||||
Gene Model P. falciparum ortholog | PF3D7_0507500 | ||||||||||||||||||
Gene product | subtilisin-like protease 1 | ||||||||||||||||||
Gene product: Alternative name | SUB1 | ||||||||||||||||||
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3'-UTR | |||||||||||||||||||
Gene Model of Parasite | PBANKA_1340000 | ||||||||||||||||||
Gene product | dihydrofolate synthase/folylpolyglutamate synthase, putative | ||||||||||||||||||
Gene product: Alternative name | PbDHFS-FPGS | ||||||||||||||||||
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Insertion/Replacement locus | |||||||||||||||||||
Replacement / Insertion | Replacement locus | ||||||||||||||||||
Gene Model of Parasite | Not available | ||||||||||||||||||
Gene product | Not available | ||||||||||||||||||
Gene product: Alternative name | |||||||||||||||||||
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