RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-4601
Malaria parasiteP. berghei
Genotype
Transgene
Transgene not Plasmodium: GFP
Promoter: Gene model: PBANKA_1107100; Gene model (P.falciparum): PF3D7_0507500; Gene product: subtilisin-like protease 1 (SUB1)
3'UTR: Gene model: PBANKA_1340000; Gene product: dihydrofolate synthase/folylpolyglutamate synthase, putative (PbDHFS-FPGS)
Replacement locus: Gene model: Not available; Gene product: Not available
Phenotype Asexual bloodstage; Gametocyte/Gamete;
Last modified: 11 April 2019, 18:29
  *RMgm-4601
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 30941868
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone 8417HP
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherPace T, Ponzi M, Olivieri A
Name Group/DepartmentDipartimento di Malattie Infettive
Name InstituteIstituto Superiore di Sanità
CityRome
CountryItaly
Name of the mutant parasite
RMgm numberRMgm-4601
Principal nameSUB1/prom1; SUB1/prom2; SUB1/prom3
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageThe first two constructs, named SUB1/prom1 and SUB1/prom2, included the DNA sequence spanning the region between 1279 bp and either 25 bp or 450 bp upstream of the pbsub1 ATG, respectively including or excluding an intron present in the pbsub1 5’ UTR. The resulting transgenic parasite lines were both found to specifically display reporter gene expression in the cytoplasm of gametocytes, with no detectable expression in asexual blood stage parasites. We then generated a third construct, where a larger DNA segment, extending from 2385 bp to 450 bp upstream of the pbsub1 ATG was fused to gfp. In the obtained transgenic line, named SUB1/prom3, the reporter gene was expressed both in gametocytes and schizonts
Gametocyte/GameteThe first two constructs, named SUB1/prom1 and SUB1/prom2, included the DNA sequence spanning the region between 1279 bp and either 25 bp or 450 bp upstream of the pbsub1 ATG, respectively including or excluding an intron present in the pbsub1 5’ UTR. The resulting transgenic parasite lines were both found to specifically display reporter gene expression in the cytoplasm of gametocytes, with no detectable expression in asexual blood stage parasites. We then generated a third construct, where a larger DNA segment, extending from 2385 bp to 450 bp upstream of the pbsub1 ATG was fused to gfp. In the obtained transgenic line, named SUB1/prom3, the reporter gene was expressed both in gametocytes and schizonts.
In all the SUB1/prom lines, the GFP fluorescence signal significantly increased in activated male gametocytes, indicating upregulation of pbsub1 gene expression during male gamete formation.
Fertilization and ookineteNot tested
OocystNot tested
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
Three different transgenic lines were produced that express GFP under control of different fragments of the sub1 promoter region. These constructs were integrated into a silent locus into the genome.

The first two constructs, named SUB1/prom1 and SUB1/prom2, included the DNA sequence spanning the region between 1279 bp and either 25 bp or 450 bp upstream of the pbsub1 ATG, respectively including or excluding an intron present in the pbsub1 5’ UTR. The resulting transgenic parasite lines were both found to specifically display reporter gene expression in the cytoplasm of gametocytes, with no detectable expression in asexual blood stage parasites. We then generated a third construct, where a larger DNA segment, extending from 2385 bp to 450 bp upstream of the pbsub1 ATG was fused to gfp. In the obtained transgenic line, named SUB1/prom3, the reporter gene was expressed both in gametocytes and schizonts

Protein (function)
The subtilisin-like protease SUB1, a bacterial-like serine protease, is a Plasmodium merozoite product essential for the parasite erythocytic cycle. In P. falciparum, SUB1 was shown to have a dual function. It is crucial for merozoite egress from erythrocytes and renders released merozoites competent for a new round of erythrocyte invasion.
The subtilisin-like protease SUB1 is expressed both in liver and blood schizonts, then secreted into the PV from vesicular organelles called exonemes just prior to schizont rupture. The proteolytic activity of SUB1 has been shown to be important for maturation and egress of invasive merozoites from both infected erythrocytes and hepatocytes.
During Plasmodium falciparum merozoite egress, PfSUB1 carries out the maturation of a family of papain-like proteins called the serine repeat antigens (SERAs), while for merozoite maturation the role of SUB1 is to undertake the processing of several merozoite surface proteins (MSPs).

Phenotype
Three different transgenic lines were produced that express GFP under control of different fragments of the sub1 promoter region. These constructs were integrated into a silent locus into the genome.

The first two constructs, named SUB1/prom1 and SUB1/prom2, included the DNA sequence spanning the region between 1279 bp and either 25 bp or 450 bp upstream of the pbsub1 ATG, respectively including or excluding an intron present in the pbsub1 5’ UTR. The resulting transgenic parasite lines were both found to specifically display reporter gene expression in the cytoplasm of gametocytes, with no detectable expression in asexual blood stage parasites. We then generated a third construct, where a larger DNA segment, extending from 2385 bp to 450 bp upstream of the pbsub1 ATG was fused to gfp. In the obtained transgenic line, named SUB1/prom3, the reporter gene was expressed both in gametocytes and schizonts

These results suggested that the pbsub1 gene includes two distinct regulatory regions: one, closest to the ATG, that specifically drives gene expression in the sexual stages and another, further upstream, necessary to drive expression also in asexual stages. In all the SUB1/prom lines, the GFP fluorescence signal significantly increased in activated male gametocytes, indicating upregulation of pbsub1 gene expression during male gamete formation.

Additional information
From the paper:
'It was recently shown that PbSUB1 is also expressed in P. berghei sexual stages, but the function of the enzyme in gametocytes/gametes and its potential substrates in these stages are still unknown. Here we show that PbSUB1 is selectively expressed in male P. berghei gametocytes and that it localizes to male osmiophilic bodies (MOBs). Using conditional depletion of PbSUB1 expression or enzyme activity, we show that the protease plays a role in male gamete egress.
We also show for the first time that the PbSUB1 substrate PbSERA3 is expressed in gametocytes and processed by PbSUB1 upon gametocyte activation.'

'We next investigated the subcellular localization of PbSUB1 in mature P. berghei gametocytes by immunofluorescence (IFA) using an anti-PbSUB1 antibody. Antibody specificity was confirmed in gametocytes by double IFA with an anti-HA monoclonal antibody on a P. berghei line in which the endogenous pbsub1 gene had been modified with a triple HA-tag at the C-terminal end [see mutant RMgm-973). The two signals co-localized in gametocytes, producing a punctate pattern. Double IFA with antibodies to the nuclear protein SE translocation proto-oncogene like (SET), which is highly abundant in male gametocytes and with the female gametocyte marker G377, showed that PbSUB1 expression in gametocytes is male-specific. Of one hundred SUB1-positive gametocytes examined, none showed a fluorescence signal with the G377 antibody. Co-localization experiments with an antibody against the Male Development Protein 1 (MDV1), a gametocyte-specific protein associated with OBs in both P. berghei male and female gametocytes, showed that PbSUB1 specifically localizes to these secretory organelles in males (MOBs)'

Other mutants


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationTo produce the SUB1/prom constructs, the putative pbsub1 3’ UTR, spanning from -36 bp and +766 bp from the stop codon, was amplified by genomic DNA with the primer pair SUB1-3’UTR_for and SUB1-3’UTR_rev, digested with NarI/SacI and cloned in the plasmid pBAT-GFP, digested with the same enzymes. 2 putative pbsub1 promoter regions, respectively named SUB1-prom1 and SUB1-prom2, respectively of 830 bp (from -1279 bp and -450 bp from ATG) and 1956 bp (from -2385 bp to -450 bp from ATG, partially overlapping the EST of gene located upstream of sub1) were amplified by genomic DNA. The amplification products were respectively digested with SpeI/NdeI and SacII/NotI and cloned into the pBAT-GFP, containing the putative pbsub1 3’UTR, digested with the same enzymes. The obtained constructs were respectively named pSUB1-prom1 and pSUB1-prom2.
We also generated a third construct, where a larger DNA segment, extending from 2385 bp to 450 bp upstream of the pbsub1 ATG was fused to gfp.

The plasmids are integrated by double cross-over integration in a locus on P. berghei chromosome 6 between two hypothetical open reading frames (PBANKA_061210 and PBANKA_061220), both displaying only limited gene expression in the stages studied thus far. The integration of pBAT-GFP plasmid at this locus was designed to occur 1 kb 3' of PBANKA_061210 and 0.9 kb of PBANKA_260 061220.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1107100
Gene Model P. falciparum ortholog PF3D7_0507500
Gene productsubtilisin-like protease 1
Gene product: Alternative nameSUB1
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_1340000
Gene productdihydrofolate synthase/folylpolyglutamate synthase, putative
Gene product: Alternative namePbDHFS-FPGS
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite Not available
Gene productNot available
Gene product: Alternative name
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4