RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-973
Malaria parasiteP. berghei
Genotype
TaggedGene model (rodent): PBANKA_1107100; Gene model (P.falciparum): PF3D7_0507500; Gene product: subtilisin-like protease 1 (SUB1)
Name tag: HA
Transgene
Transgene not Plasmodium: GFP (gfp-mu3)
Promoter: Gene model: PBANKA_1133300; Gene model (P.falciparum): PF3D7_1357100; Gene product: elongation factor 1-alpha (eef1a)
3'UTR: Gene model: PBANKA_0719300; Gene product: bifunctional dihydrofolate reductase-thymidylate synthase, putative (dhfr/ts)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Phenotype Asexual bloodstage; Liver stage;
Last modified: 24 December 2013, 20:21
  *RMgm-973
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging, Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 24348254
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA 507cl1 (RMgm-7)
Other information parent lineP.berghei ANKA 507cl1 (RMgm-7) is a reference ANKA mutant line which expresses GFP under control of a constitutive promoter. This reference line does not contain a drug-selectable marker (PubMed: PMID: 16242190).
The mutant parasite was generated by
Name PI/ResearcherC. Suarez; O. Billker; M.J. Blackman
Name Group/DepartmentDivision of Parasitology
Name InstituteMedical Research Council National Institute for Medical Research, Mill Hill
CityLondon
CountryUK
Name of the mutant parasite
RMgm numberRMgm-973
Principal namePbSUB1-HA
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationNo
Phenotype
Asexual blood stagePbSUB1-HA expression in blood stages
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
OocystNot tested
SporozoiteNot different from wild type
Liver stagePbSUB1-HA expression in (mature) liver stages.
Additional remarks phenotype

Mutant/mutation
The mutant expresses a HA-tagged version of SUB1

Protein (function)
The subtilisin-like protease SUB1, a bacterial-like serine protease, is a Plasmodium merozoite product essential for the parasite erythocytic cycle. In P. falciparum, SUB1 was shown to have a dual function. It is crucial for merozoite egress from erythrocytes and renders released merozoites competent for a new round of erythrocyte invasion. In the process of P. falciparum merozoite egress from erythrocytes, SUB1 carries out the maturation of the family of papain-like proteases called serine repeat antigens (SERAs). It remains unknown whether the SERAs have a direct role in membrane disruption, or whether they in turn maturate other effectors, but it is established that their SUB1-dependent maturation is essential for the egress of merozoite. The reported role of SUB1 in P. falciparum merozoite invasion is to undertake the processing of merozoite surface proteins (MSPs), including MSP1. After SUB1 maturation, the membrane-anchored C-terminal 42-kDa fragment of MSP1, remains associated with the other MSP1 fragments and additional partners, including MSP6 and MSP7. Analyses of conditional knock-out mutants lacking expression of SUB1 in liver stages (RMgm-952, RMgm-972) show an essential role of SUB1 for formation of infectious merozoites

Phenotype
PbSUB1-HA expression in blood and liver stages. No expression in sporozoites or early liver stages.
PbSUB1-HA schizonts with the anti-HA mAb again produced a clear punctate signal. The foci were associated with but distinct from individual merozoite nuclei, and similar to the exoneme-specific signal previously observed in P. falciparum blood stage schizonts.

Additional information

Other mutants
RMgm-952: An independent mutant containing a FRTed ORF of the sub1 locus
RMgm-972: An independent mutant containing a FRTed ORF of the sub1 locus


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1107100
Gene Model P. falciparum ortholog PF3D7_0507500
Gene productsubtilisin-like protease 1
Gene product: Alternative nameSUB1
Details of the genetic modification
Name of the tagHA
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/constructPlasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe targeting plasmid, called pPbSUB1-HA, contained 1,248 bp of targeting sub1 sequence fused to the tag, followed by the 3' UTR sequence from the P. berghei dihydrofolate reductase thymidylate synthase (pbdhfr-ts) gene to ensure correct transcription termination and polyadenylation of the modified gene. The presence of the human dihydrofolate reductase (hDHFR) cassette allowed selection of integrant parasites with pyrimethamine. The integration construct was linearised by restriction digestion at a unique Hind III site prior to transfection.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP (gfp-mu3)
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/constructPlasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitegfp (FACS)
Promoter of the selectable markereef1a
Selection (positive) procedureFACS (flowsorting)
Selection (negative) procedureNo
Additional remarks genetic modificationThe GFP gene (1 copy) has been inserted into the 230p locus (PBANKA_030600) by double cross-over integration.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1133300
Gene Model P. falciparum ortholog PF3D7_1357100
Gene productelongation factor 1-alpha
Gene product: Alternative nameeef1a
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0719300
Gene productbifunctional dihydrofolate reductase-thymidylate synthase, putative
Gene product: Alternative namedhfr/ts
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4