RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-4577
Malaria parasiteP. berghei
Genotype
MutatedGene model (rodent): PBANKA_1224400; Gene model (P.falciparum): PF3D7_0806300; Gene product: ferlin, putative (ferlin-like protein, FLP)
Details mutation: 'Promoter swap' mutant: the promoter of FLP replaced by the promoter of clag (PBANKA_1400600)
TaggedGene model (rodent): PBANKA_1224400; Gene model (P.falciparum): PF3D7_0806300; Gene product: ferlin, putative (ferlin-like protein, FLP)
Name tag: HA
Transgene
Transgene not Plasmodium: RFP
Promoter: Gene model: PBANKA_1319500; Gene model (P.falciparum): PF3D7_1455800; Gene product: LCCL domain-containing protein (LAP4; LCCL/lectin adhesive-like protein 4; CCp2)
3'UTR: Gene model: PBANKA_1359600; Gene product: transmission blocking target antigen precursor 6-cysteine protein (P48/45)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Transgene
Transgene not Plasmodium: GFP
Promoter: Gene model: PBANKA_0416100; Gene model (P.falciparum): PF3D7_0905300; Gene product: dynein heavy chain, putative
3'UTR: Gene model: PBANKA_1010600; Gene product: calmodulin, putative (cam)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Phenotype Gametocyte/Gamete; Fertilization and ookinete; Oocyst; Sporozoite;
Last modified: 2 January 2019, 17:12
  *RMgm-4577
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene mutation, Gene tagging, Introduction of a transgene, Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 30597708
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA cl15cy1
Other information parent lineA reference wild type clone from the ANKA strain of P. berghei (PubMed: PMID: 17406255).
The mutant parasite was generated by
Name PI/ResearcherObrova K, Mair GR, Mueller AK
Name Group/DepartmentCenter for Infectious Diseases, Parasitology Unit
Name InstituteHeidelberg University Hospital
CityHeidelberg
CountryGermany
Name of the mutant parasite
RMgm numberRMgm-4577
Principal nameΔflp::HA gam (820)
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteFLP::HA was clearly depleted in gametocytes. Normal gametocyte production
Fertilization and ookineteNo ookinete formation (large numbers of unfertilised gametocytes). Mature male and female gametocytes/gametes failed to egress from their host red blood cell, thereby preventing fertilisation
OocystNo oocyst formation
SporozoiteNo oocyst (or sporozoite) formation
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
In the 'promoter swap' mutant is the promoter of the endogenous flp gene replaced by the promoter of clag (PBANKA_1400600).
The mutant expresses a C-terminal HA-tagged version of FLP (since the promoter swap was made in mutant RMgm-4578 (FLP::HA(820)), that expresses a HA-tagged version of FLP). In addition, the mutants expresses GFP under control of a male and RFP under control of a female gametocyte specific promoter.

Protein (function)
The P. berghei ferlin-like protein (FLP, PBANKA_1224400) contains six predicted C2 domains, a C-terminal transmembrane domain and a Fer domain (a ferlin-specific motif of unknown function). These typical features cluster FLP together with ferlin (PBANKA_1319300) into the ferlin protein family.Ferlins are typically embedded in vesicular membranes via a single, C-terminal transmembrane domain with the N-terminus of the protein facing the cytosol.' Negative attempts to disrupt FLP (RMgm-4576) indicates an essential role during growth/multiplication of asexual stages.
Ferlins are established mediators of calcium-induced membrane fusion and regulated exocytosis in higher eukaryotes


Phenotype
FLP is essential for blood stage development/multiplication (see RMgm-4576) for unsuccessful attempts to disrupt the flp gene). In the 'promoter-swap' mutant the promoter of flp is replaced by an 'asexual blood stage’ promoter that is silent (or has a strongly reduced activity) in gametocytes (the promoter of clag, PBANKA_1400600).

In the mutant expression of FLP::HA was clearly depleted in gametocytes. Normal gametocyte production. No ookinete formation (large numbers of unfertilised gametocytes). Mature male and female gametocytes/gametes failed to egress from their host red blood cell, thereby preventing fertilisation. No oocyst/sporozoite formation.

Additional information
Evidence is presented that:
- both PVM and the red blood cell membrane are not ruptured in activated gametocytes of the mutant.
- FLP relocalizes to the cell peripery during activation of gametocytes

From the paper:
'To  assess  whether  FLP  co-localizes  with  these  previously  published  egress  factors G377 (PBANKA_1463000) and PPLP2 (PBANKA_1432400),  we  generated flp::HA;g377::mCherry  and  flp::HA;pplp2::mCherry  double  mutants,  in  which FLP is endogenously tagged with HA while G377 and PPLP2 are endogenously tagged with mCherry, respectively. Neither of the lines showed co-localization between FLP and either of the two proteins, arguing against FLP localization to the G377-positive OBs or to the PPLP2-positive egress vesicles.' 
 
Other mutants


  Mutated: Mutant parasite with a mutated gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1224400
Gene Model P. falciparum ortholog PF3D7_0806300
Gene productferlin, putative
Gene product: Alternative nameferlin-like protein, FLP
Details of the genetic modification
Short description of the mutation'Promoter swap' mutant: the promoter of FLP replaced by the promoter of clag (PBANKA_1400600)
Inducable system usedNo
Short description of the conditional mutagenesisNot available
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitetgdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modification
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1224400
Gene Model P. falciparum ortholog PF3D7_0806300
Gene productferlin, putative
Gene product: Alternative nameferlin-like protein, FLP
Details of the genetic modification
Name of the tagHA
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedYes
Name of PlasmoGEM construct/vector-
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasiteNo selectable marker
Promoter of the selectable markerNo
Selection (positive) procedureNo
Selection (negative) procedureNo
Additional remarks genetic modificationThe hdhfr/yfcu selectable marker cassette used to HA-tag FLP has been removed by negative selection
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameRFP
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasiteNo selectable marker
Promoter of the selectable markerNo
Selection (positive) procedureNo
Selection (negative) procedureNo
Additional remarks genetic modificationThe hdhfr/yfcu selectable marker cassette used to introduce RFP has been removed by negative selection
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1319500
Gene Model P. falciparum ortholog PF3D7_1455800
Gene productLCCL domain-containing protein
Gene product: Alternative nameLAP4; LCCL/lectin adhesive-like protein 4; CCp2
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_1359600
Gene producttransmission blocking target antigen precursor 6-cysteine protein
Gene product: Alternative nameP48/45
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasiteNo selectable marker
Promoter of the selectable markerNo
Selection (positive) procedureNo
Selection (negative) procedureNo
Additional remarks genetic modificationThe hdhfr/yfcu selectable marker cassette used to introduce GFP has been removed by negative selection
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0416100
Gene Model P. falciparum ortholog PF3D7_0905300
Gene productdynein heavy chain, putative
Gene product: Alternative name
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_1010600
Gene productcalmodulin, putative
Gene product: Alternative namecam
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4