RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-4518
Malaria parasiteP. berghei
Genotype
Transgene
Transgene not Plasmodium: Nanoluciferase
Promoter: Gene model: PBANKA_0412900; Gene model (P.falciparum): PF3D7_0315200; Gene product: circumsporozoite- and TRAP-related protein (CTRP)
3'UTR: Gene model: PBANKA_1349800; Gene product: thrombospondin-related anonymous protein | sporozoite surface protein 2 (sporozoite surface protein 2; SSP2; SSP-2; TRAP)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Phenotype Fertilization and ookinete;
Last modified: 6 September 2018, 15:59
  *RMgm-4518
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 30181368
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone GIMO-PbANKA (RMgm-687)
Other information parent lineGIMO-PbANKA (RMgm-687) contains as a selectable marker (SM) the fusion gene of hdhfr (human dihydrofolate reductase; positive SM) and yfcu (yeast cytosine deaminase and uridyl phosphoribosyl transferase; negative SM) stably integrated into the 230p locus (PBANKA_030600) through double cross-over recombination. The SM is under control of the P. berghei eef1α promoter. This reference line of P. berghei ANKA line is used for rapid introduction of transgenes free of drug-resistance genes (PubMed: PMID: 22216235).
The mutant parasite was generated by
Name PI/ResearcherCalit J, Bargieri DY
Name Group/DepartmentDepartment of Parasitology, Institute of Biomedical Sciences
Name InstituteUniversity of São Paulo
CitySão Paulo
CountryBrazil
Name of the mutant parasite
RMgm numberRMgm-4518
Principal nameOokluc
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteOokluc had negligible nLuc activity in circulating blood stages (time 0, no incubation), and in in vitro fertilization assays (conversion) the signal has a relative increase of ~40-fold after 6 hr and ~2,000-fold after 24 hr, demonstrating that the ctrp promoter is sufficiently silenced to prevent detectable nLuc expression in blood stages and is activated only upon conversion into mosquito sexual stages.

To verify if the increase in nLuc activity in (ookinete) conversion assays with Ookluc was dependent on fertilization, we deleted the mtrap gene from the Ookluc genome. MTRAP-knockout (MTRAP-KO) gametocytes can activate, but the gametes remain trapped inside the host cell. There was no increase of nLuc activity in Ookluc-MTRAP-KO parasites after 24 hr of conversion assay – the absence of ookinetes was confirmed by blood smears – showing that gametocyte activation per se is not sufficient for activation of the ctrp promoter, hence nLuc expression and activity in Ookluc parasites depend on gamete egress and fertilization.
OocystNot tested
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses nanoluciferase under control of the (ookinete specific) ctrp promoter. The nanoluciferase expression cassette has been integrated into the neutral 230p locus.

The mutant has been generated and selected using the GIMO transfection method ('gene insertion/marker out') of transfection of a GIMO mother line that contains the hdhfr::yfcu selectable marker into the silent 230p locus.

The mutant has been generated in the reference line GIMOPbANKA (RMgm-687). This GIMO mother line is used for introduction of transgenes into the modified 230p locus through transfection with constructs that target the 230p locus. These constructs insert into the 230p locus (‘gene insertion’), thereby removing the hdhfr::yfcu selectable marker (‘marker out’) from the genome of the mother lines. Transgenic parasites that are marker-free are subsequently selected by applying negative drug selection using 5-FC. This selection procedure is performed in vivo in mice

Protein (function)

Phenotype
Ookluc had negligible nLuc activity in circulating blood stages (time 0, no incubation), and in in vitro fertilization assays (conversion) the signal has a relative increase of ~40-fold  after 6 hr and ~2,000-fold after 24 hr, demonstrating that the ctrp promoter is sufficiently silenced to prevent detectable nLuc expression in blood stages and is activated only upon conversion into mosquito sexual stages.

To verify if the increase in nLuc activity in (ookinete) conversion assays with Ookluc was  dependent on fertilization, we deleted the mtrap gene from the Ookluc genome. MTRAP-knockout (MTRAP-KO) gametocytes can activate, but the gametes remain trapped inside the host cell. There was no increase of nLuc activity in Ookluc-MTRAP-KO parasites after 24 hr of conversion assay – the absence of ookinetes was confirmed by blood smears – showing that gametocyte activation per se is not sufficient for activation of the ctrp promoter, hence nLuc expression and activity in Ookluc parasites depend on gamete egress and fertilization.

The increase in nLuc activity after 6h of conversion assay with Ookluc showed that the ctrp promoter likely becomes active soon after zygote formation. Inhibition of palmitoylation with 2-Bromopalmitic acid (2-BP) 1 hour post Ookluc activation, blocking zygote to ookinete morphogenesis, did not reduce the nLuc activity after 6h or 24h. This indicates that once the ctrp promoter is activated in zygotes it accumulates nLuc regardless of ookinete  formation, and precludes Ookluc as a tool for searching compounds with TB activity through inhibition of ookinete morphogenesis.

Additional information

From the Abstract:
'Here we demonstrate the generation of a Plasmodium model for drug screens against  gametes and fertilization. The new P. berghei line, named Ookluc, was genetically and pharmacologically validated and scalable for HTS. Screening the Pathogen Box from the Medicines for Malaria Venture (MMV) using the new model identified promising TB compounds. The use of Ookluc in different libraries of compounds may aid in the identification of transmission-blocking drugs not assessed in screens against asexual stages or gametocytes.'

Other mutants


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameNanoluciferase
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasiteNo selectable marker
Promoter of the selectable markerNo
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationTo construct the plasmid for generating the Ookluc strain, the 1590 base pairs upstream the genomic sequence of the P. berghei “circumsporozoite protein and thrombospondin-related adhesive protein [TRAP]-related protein” (CTRP, PBANKA_0412900) were PCR-amplified using primers forward GGGCTGCAGCCACTTCCTCAAAATGAATAGG (PstI restriction site underlined) and reverse GGATCCTTGTGTTTTGCTTTGTATTTAAA (BamHI restriction site underlined). The coding sequence of Nanoluciferase (nLuc) was PCR-amplified from the plasmid PfNluc using primers forward GGATCCATGGTCTTCACACTCGAAG (BamHI restriction site underlined) and reverse GATATCTTACGCCAGAATGCGTTCG (EcoRV restriction site underlined). The 551 base pairs downstream (3’UTR) the genomic sequence of the P. berghei Thrombospondin-related Adhesive Protein (TRAP, PBANKA_1349800) were PCR-amplified using primers forward GATATCTTTTAATAAACATATATATCTAGAT EcoRV restriction site underlined) and reverse GCGGCCGCCATCGCTGCATTAATGATTT (NotI restriction site underlined). The amplified sequences were cloned into the plasmid pL0043 (19), designed for transfection of the P. berghei GIMO line, using the restriction sites PstI, BamHI, EcoRV and NotI (FastDigest, Thermo Scientific) to generate the plasmid p43-Ookluc.
Additional remarks selection procedureThis transgenic parasite does not contain a drug-selectable marker.
The mutant has been generated in the reference line GIMOPbANKA (RMgm-687). The GIMO mother line is used for introduction of transgenes into the modified 230p locus through transfection with constructs that target the 230p locus. These constructs insert into the 230p locus (‘gene insertion’), thereby removing the hdhfr::yfcu selectable marker (‘marker out’) from the genome of the mother lines. Transgenic parasites that are marker-free are subsequently selected by applying negative drug selection using 5-FC. This selection procedure is performed in vivo in mice.
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0412900
Gene Model P. falciparum ortholog PF3D7_0315200
Gene productcircumsporozoite- and TRAP-related protein
Gene product: Alternative nameCTRP
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_1349800
Gene productthrombospondin-related anonymous protein | sporozoite surface protein 2
Gene product: Alternative namesporozoite surface protein 2; SSP2; SSP-2; TRAP
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4