top of page |
Type and details of transgene |
Is the transgene Plasmodium derived |
Transgene: not Plasmodium |
Transgene name | the biotin ligase BirA* fused to EXP1/HEP17 (PBANKA_0926700) |
top of page |
Details of the genetic modification |
Inducable system used | No |
Additional remarks inducable system |
|
Type of plasmid/construct | (Linear) plasmid single cross-over |
PlasmoGEM (Sanger) construct/vector used | No |
Modified PlasmoGEM construct/vector used | No
|
Plasmid/construct map |
|
Plasmid/construct sequence |
|
Restriction sites to linearize plasmid |
|
Selectable marker used to select the mutant parasite | tgdhfr |
Promoter of the selectable marker | eef1a |
Selection (positive) procedure | pyrimethamine |
Selection (negative) procedure | No |
Additional remarks genetic modification | The biotin ligase BirA* was fusedto EXP1, which is a known protein of the PVM in blood and liver stage parasites. With this aim, we generated the plasmid pL0017-CEXP1BirA*-V5, encoding an EXP1-BirA* fusion protein with a C-terminal V5 tag under control of the constitutive P. berghei eef1a promoter. This vector integrates by single-crossover homologous recombination into either the c-ssu-rRNA locus or d-ssurRNA locus of P. berghei and conveys resistance to pyrimethamine.
The pL0017-CEXP1-BirA*-V5 plasmid was generated by first amplifying the BirA* coding sequence from pcDNA3.1-mycBioID using primers BirA-V5-fw and BirA-V5-rev, whereby a V5 tag was added to the C-terminal end of BirA*. The PCR product was then cloned into pL0017 using BamHI and XbaI restriction sites. Subsequently, the EXP1 coding sequence was amplified from blood stage cDNA using primers EXP1-fw and EXP1-rev and cloned in frame with BirA*-V5 into the pL0017 vector using BamHI and NotI restriction sites. |
Additional remarks selection procedure | |
top of page |
Other details transgene |
top of page |
Promoter |
Gene Model of Parasite |
PBANKA_1133300
|
Gene Model P. falciparum ortholog |
PF3D7_1357100
|
Gene product | elongation factor 1-alpha |
Gene product: Alternative name | eef1a |
Primer information details of the primers used for amplification of the promoter sequence
Primer information details of the primers used for amplification of the promoter sequence
Sequence Primer 1 | |
Additional information primer 1 | |
Sequence Primer 2 | |
Additional information primer 2 | |
|
|
top of page |
3'-UTR |
Gene Model of Parasite |
Not available
|
Gene product | Not available |
Gene product: Alternative name | |
Primer information details of the primers used for amplification the 3'-UTR sequences
Primer information details of the primers used for amplification the 3'-UTR sequences
Sequence Primer 1 | |
Additional information primer 1 | |
Sequence Primer 2 | |
Additional information primer 2 | |
|
|
Insertion/Replacement locus |
Replacement / Insertion | Insertion locus |
Gene Model of Parasite |
Not available
|
Gene product | Not available |
Gene product: Alternative name | small subunit ribosomal rna gene (c-or d-type unit) |
Primer information details of the primers used for amplification of the target sequences
Primer information details of the primers used for amplification of the target sequences
Sequence Primer 1 | |
Additional information primer 1 | |
Sequence Primer 2 | |
Additional information primer 2 | |
Sequence Primer 3 | |
Additional information primer 3 | |
Sequence Primer 4 | |
Additional information primer 4 | |
|
|
top of page |