RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-4417
Malaria parasiteP. berghei
Genotype
Transgene
Transgene not Plasmodium: the biotin ligase BirA* fused to EXP1/HEP17 (PBANKA_0926700)
Promoter: Gene model: PBANKA_1133300; Gene model (P.falciparum): PF3D7_1357100; Gene product: elongation factor 1-alpha (eef1a)
3'UTR: Gene model: Not available; Gene product: Not available
Insertion locus: Gene model: Not available; Gene product: Not available (small subunit ribosomal rna gene (c-or d-type unit))
Phenotype Asexual bloodstage;
Last modified: 3 March 2018, 20:36
  *RMgm-4417
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 29404413
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone RMgm-928
Other information parent lineA P. berghei reference line expressing mCherry under the control of the P. berghei hsp70 promoter. The mutant does not contain a drug-selectable marker. The mCherry expression cassette has been introduced into the silent p23p locus
The mutant parasite was generated by
Name PI/ResearcherSchnider CB, Burda PC
Name Group/DepartmentInstitute of Cell Biology
Name InstituteUniversity of Bern
CityBern
CountrySwitzerland
Name of the mutant parasite
RMgm numberRMgm-4417
Principal nameEXP1-BirA*-V5
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageEXP1-BirA*-V5 expression in blood stages
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
OocystNot tested
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses the parasitophorous vacuole membrane (PVM) protein EXP1/HEP17 fused to BirA*. The fusion gene is integrated into the silen c/d-ssurRNA gene unit. In addition the mutant expresses mCherry under the HSP70 promoter.

The biotin ligase BirA* was fusedto EXP1, which is a known protein of the PVM in blood and liver stage parasites. With this aim, we generated the plasmid pL0017-CEXP1BirA*-V5, encoding an EXP1-BirA* fusion protein with a C-terminal V5 tag under control of the constitutive P. berghei eef1a promoter. This vector integrates by single-crossover homologous recombination into either the c-ssu-rRNA locus or d-ssurRNA locus of P. berghei and conveys resistance to pyrimethamine.

Protein (function)

Phenotype
To investigate whether this construct is expressed in blood stages and leads to the biotinylation of PVM proteins, we isolated the blood of mice infected with transgenic EXP1-BirA*-V5 parasites by cardiac puncture and cultivated it in an in vitro schizont culture for 18 h in the presence of 150  M biotin. Biotinylated proteins were visualized by immunofluorescence analysis (IFA) using fluorescently labeled streptavidin. As expected, we observed a strong streptavidin signal, which was peripherally located around parasites and co-localized with theV5-taggedEXP1-BirA*fusion protein. We further confirmed this finding by performing Western blot analyses of EXP1BirA*-V5 parasites grown in the presence or absence of biotin and parental WT parasites cultivated in the presence of biotin. We observed a substantial increase in the levels of biotinylated proteins in lysates of EXP1-BirA*-V5 parasites grown in the presence of biotin in comparison to the WT and no-biotin controls, where only very few biotinylated proteins were visible. In conclusion, these data demonstrate that EXP1-BirA*-V5 is active and biotinylates a range of target proteins at the parasite periphery.

Additional information

This parasite was used to biotinylate proteins of the PVM. These we further processed by affinity purification, liquid chromatography-tandem mass spectrometry (LC-MS/MS), and label-free quantitation, leading to a list of 61 known and candidate PVM proteins. Seven proteins were analyzed further during blood and liver stage development. This resulted in the identification of three novel PVM proteins, which were the serine/threonine protein phosphatase UIS2 (PlasmoDB accession no. PBANKA_1328000) and two conserved Plasmodium proteins with unknown functions (PBANKA_0519300 and PBANKA_0509000).

Other mutants


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene namethe biotin ligase BirA* fused to EXP1/HEP17 (PBANKA_0926700)
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitetgdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe biotin ligase BirA* was fusedto EXP1, which is a known protein of the PVM in blood and liver stage parasites. With this aim, we generated the plasmid pL0017-CEXP1BirA*-V5, encoding an EXP1-BirA* fusion protein with a C-terminal V5 tag under control of the constitutive P. berghei eef1a promoter. This vector integrates by single-crossover homologous recombination into either the c-ssu-rRNA locus or d-ssurRNA locus of P. berghei and conveys resistance to pyrimethamine.

The pL0017-CEXP1-BirA*-V5 plasmid was generated by first amplifying the BirA* coding sequence from pcDNA3.1-mycBioID using primers BirA-V5-fw and BirA-V5-rev, whereby a V5 tag was added to the C-terminal end of BirA*. The PCR product was then cloned into pL0017 using BamHI and XbaI restriction sites. Subsequently, the EXP1 coding sequence was amplified from blood stage cDNA using primers EXP1-fw and EXP1-rev and cloned in frame with BirA*-V5 into the pL0017 vector using BamHI and NotI restriction sites.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1133300
Gene Model P. falciparum ortholog PF3D7_1357100
Gene productelongation factor 1-alpha
Gene product: Alternative nameeef1a
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite Not available
Gene productNot available
Gene product: Alternative name
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionInsertion locus
Gene Model of Parasite Not available
Gene productNot available
Gene product: Alternative namesmall subunit ribosomal rna gene (c-or d-type unit)
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4