RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-4402
Malaria parasiteP. berghei
Genotype
MutatedGene model (rodent): PBANKA_0403200; Gene model (P.falciparum): PF3D7_0304600; Gene product: circumsporozoite (CS) protein (CSP)
Details mutation: The P. berghei cs gene replaced by P. vivax cs VK210 (PVP01_0835600)
MutatedGene model (rodent): PBANKA_1349800; Gene model (P.falciparum): PF3D7_1335900; Gene product: thrombospondin-related anonymous protein | sporozoite surface protein 2 (sporozoite surface protein 2; SSP2; SSP-2; TRAP)
Details mutation: The endogenous P. berghei trap gene replaced with the trap gene of P. vivax (PVP01_1218700)
Transgene
Transgene not Plasmodium: A fusion of GFP (gfp-mu3) and Luciferase Firefly (LucIAV)
Promoter: Gene model: PBANKA_1133300; Gene model (P.falciparum): PF3D7_1357100; Gene product: elongation factor 1-alpha (eef1a)
3'UTR: Gene model: PBANKA_0719300; Gene product: bifunctional dihydrofolate reductase-thymidylate synthase, putative (dhfr/ts)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
PhenotypeNo phenotype has been described
Last modified: 30 June 2023, 15:01
  *RMgm-4402
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene mutation, Gene mutation, Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 29986894
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone RMgm-4136
Other information parent lineIn this parent mutant line the endogenous P. berghei cs gene has been replaced by the P. vivax VK210 cs gene (PVP01_0835600). This has been performed by the GIMO method of transfection. The P. vivax cs gene is under control of the 5'- and 3'-UTR regions of the P. berghei cs gene. The mutant does not contain a drug-selectable marker. The mutant also expresses the fusion protein GFP-Luciferase under control of the constitutive eefia promoter.
The mutant parasite was generated by
Name PI/ResearcherAtcheson E, Salman AM, Khan SM, Janse CJ, Reyes-Sandoval A
Name Group/DepartmentThe Jenner Institute, Nuffield Department of Medicine
Name InstituteUniversity of Oxford, The Henry Wellcome Building for Molecular Physiology
CityOxford
CountryUK
Name of the mutant parasite
RMgm numberRMgm-4402
Principal name2207cl3m0cl1 (PvCSP/PvTRAP)
Alternative namePbANKA-PvCS VK210(r)PbCS-PvTRAP(r)Pbtrap
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageNot different from wild type
Additional remarks phenotype

Mutant/mutation
In the 'double chimeric' mutant the endogenous P. berghei cs gene has been replaced by the P. vivax VK210 cs gene (PVP01_0835600) and the P. berghei trap gene has been replaced by the P. vivax trap gene (PVP01_1218700; XP_001614147.1).This line is drug-selectable marker free.

(the PvCSP insert consisted on the N- and C- terminal region from the Salvador I strain (NCBI Reference Sequence XP_001613068.1) flanking the central repeat regions of the circumsporozoite (CSP) VK210 of the Belem strain (GenBank accession number P08677).)

(the Pvtrap insert consisted of a synthetic allele composed of the protein-coding sequence of P. vivax TRAP (NCBI accession number XM_001614097) from the Salvador I strain

Protein (function)

Phenotype
Normal development throughout the complete life cycle showing complementation of P. berghei CS by P. vivax CS VK210 and P. berghei TRAP by P. vivax TRAP

Additional information
This chimeric parasite line has been used for analysing (protective) immune responses in mice immunized with different vaccines targeting P. vivax CS and P. vivax TRAP. Immunized mice were challenged with chimeric sporozoites expressing P. vivax CS and TRAP.

The double chimeric line PvCSP/PvTRAP in which both the csp (PBANKA_040320) and the trap (PBANKA_134980) gene of P. berghei were replaced with csp (PVP01_0835600; PVX_119355; XP_001613068.1) and trap (PVP01_1218700; XM_001614097) genes of P. vivax was generated by replacing the Pbtrap with the Pvtrap in a single chimeric line in which the Pbcsp had been previously replaced by the VK210 allele of Pvcsp. The single chimeric line, PbANKA-PvCS VK210(r)PbCS (line 2196cl1), had been generated using the gene insertion/marker out (GIMO) based transfection technology (RMgm-4136) and is free of a drug-selectable marker. In addition, it contains the GFP-Luciferase fusion gene as a reporter. The absence of a drug-selectable marker allowed for replacing the Pbtrap gene with the Pvtrap gene in parasites of the PbANKA-PvCS VK210(r)PbCS line in a single transfection experiment using the trap-replacement construct described by Bauza et al. (2014) (RMgm-1103). This construct contains a synthetic trap allele composed of the protein-coding sequence of P. vivax TRAP (accession number XM_001614097) from the Salvador I strain, which was codon optimized for expression in P. berghei using the GeneOptimizer software. In addition, this construct contains a positive/negative selectable marker (SM) cassette with  the hdfhr::yfcu fusion gene. Transfection of PbANKA-PvCS VK210(r)PbCS parasites with the trap-replacement construct and positive selection with pyrimethamine was performed using standard methods for transfection of P. berghei. This resulted in selection of double chimeric parasites (line 2207). Selected double chimeric parasites were cloned by the method of limiting dilution, resulting in the line PbANKA-PvCSP-VK210+PvTRAP+SM line (2207cl3). Subsequently,  the positive-negative SM cassette was recycled from the parasites of line 2207cl3 by applying negative selection by providing 5-fluorocytosine (5-FC) in the drinking water of mice. Negative selection and removal of the hdfhr::yfcu SM cassette resulted in selection of PbANKA-PvCSP-VK210+PvTRAP parasites (2207cl3m0). Selected parasites were cloned by the method of limiting dilution resulting in parasite line 2207cl3m0cl1. This double chimeric line PbANKA-PvCS VK210(r)PbCS-PvTRAP(r)Pbtrap, is referred to as PvCSP/PvTRAP parasites and does not contain a SM.


Other mutants
 


  Mutated: Mutant parasite with a mutated gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_0403200
Gene Model P. falciparum ortholog PF3D7_0304600
Gene productcircumsporozoite (CS) protein
Gene product: Alternative nameCSP
Details of the genetic modification
Short description of the mutationThe P. berghei cs gene replaced by P. vivax cs VK210 (PVP01_0835600)
Inducable system usedNo
Short description of the conditional mutagenesisNot available
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationThe double chimeric line PvCSP/PvTRAP in which both the csp (PBANKA_040320) and the trap (PBANKA_134980) gene of P. berghei were replaced with csp (PVP01_0835600; PVX_119355) and trap (PVP01_1218700; XP_001614147.1) genes of P. vivax was generated by replacing the Pbtrap with the Pvtrap in a single chimeric line in which the Pbcsp had been previously replaced by the VK210 allele of Pvcsp. The single chimeric line, PbANKA-PvCS VK210(r)PbCS (line 2196cl1), had been generated using the gene insertion/marker out (GIMO) based transfection technology (RMgm-4136) and is free of a drug-selectable marker. In addition, it contains the GFP-Luciferase fusion gene as a reporter. The absence of a drug-selectable marker allowed for replacing the Pbtrap gene with the Pvtrap gene in parasites of the PbANKA-PvCS VK210(r)PbCS line in a single transfection experiment using the trap-replacement construct described by Bauza et al. (2014) (RMgm-1103). This construct contains a synthetic trap allele composed of the protein-coding sequence of P. vivax TRAP (accession number XM_001614097) from the Salvador I strain, which was codon optimized for expression in P. berghei using the GeneOptimizer software. In addition, this construct contains a positive/negative selectable marker (SM) cassette with the hdfhr::yfcu fusion gene. Transfection of PbANKA-PvCS VK210(r)PbCS parasites with the trap-replacement construct and positive selection with pyrimethamine was performed using standard methods for transfection of P. berghei. This resulted in selection of double chimeric parasites (line 2207). Selected double chimeric parasites were cloned by the method of limiting dilution, resulting in the line PbANKA-PvCSP-VK210+PvTRAP+SM line (2207cl3). Subsequently, the positive-negative SM cassette was recycled from the parasites of line 2207cl3 by applying negative selection by providing 5-fluorocytosine (5-FC) in the drinking water of mice. Negative selection and removal of the hdfhr::yfcu SM cassette resulted in selection of PbANKA-PvCSP-VK210+PvTRAP parasites (2207cl3m0). Selected parasites were cloned by the method of limiting dilution resulting in parasite line 2207cl3m0cl1. This double chimeric line PbANKA-PvCS VK210(r)PbCS-PvTRAP(r)Pbtrap, is referred to as PvCSP/PvTRAP parasites and does not contain a SM.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Mutated: Mutant parasite with a mutated gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1349800
Gene Model P. falciparum ortholog PF3D7_1335900
Gene productthrombospondin-related anonymous protein | sporozoite surface protein 2
Gene product: Alternative namesporozoite surface protein 2; SSP2; SSP-2; TRAP
Details of the genetic modification
Short description of the mutationThe endogenous P. berghei trap gene replaced with the trap gene of P. vivax (PVP01_1218700)
Inducable system usedNo
Short description of the conditional mutagenesisNot available
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationA codon-optimized gene of P. vivax TRAP (UniProt A5K806, residues Asp25 to Lys493) was used.
A synthetic allele composed of the protein-coding sequence of P. vivax TRAP (accession number XM_001614097) from the Salvador I strain, which was codon optimized for expression in P. berghei using the GeneOptimizer software, which evaluates factors that can compromise mRNA stability, such as ribosomal binding sites, extreme GC content, cryptic splice and consensus sites, repeats, and secondary structures (Invitrogen, United Kingdom).

The double chimeric line PvCSP/PvTRAP in which both the csp (PBANKA_040320) and the trap (PBANKA_134980) gene of P. berghei were replaced with csp (PVP01_0835600; PVX_119355) and trap (PVP01_1218700; XP_001614147.1) genes of P. vivax was generated by replacing the Pbtrap with the Pvtrap in a single chimeric line in which the Pbcsp had been previously replaced by the VK210 allele of Pvcsp. The single chimeric line, PbANKA-PvCS VK210(r)PbCS (line 2196cl1), had been generated using the gene insertion/marker out (GIMO) based transfection technology (RMgm-4136) and is free of a drug-selectable marker. In addition, it contains the GFP-Luciferase fusion gene as a reporter. The absence of a drug-selectable marker allowed for replacing the Pbtrap gene with the Pvtrap gene in parasites of the PbANKA-PvCS VK210(r)PbCS line in a single transfection experiment using the trap-replacement construct described by Bauza et al. (2014) (RMgm-1103). This construct contains a synthetic trap allele composed of the protein-coding sequence of P. vivax TRAP (accession number XM_001614097) from the Salvador I strain, which was codon optimized for expression in P. berghei using the GeneOptimizer software. In addition, this construct contains a positive/negative selectable marker (SM) cassette with the hdfhr::yfcu fusion gene. Transfection of PbANKA-PvCS VK210(r)PbCS parasites with the trap-replacement construct and positive selection with pyrimethamine was performed using standard methods for transfection of P. berghei. This resulted in selection of double chimeric parasites (line 2207). Selected double chimeric parasites were cloned by the method of limiting dilution, resulting in the line PbANKA-PvCSP-VK210+PvTRAP+SM line (2207cl3). Subsequently, the positive-negative SM cassette was recycled from the parasites of line 2207cl3 by applying negative selection by providing 5-fluorocytosine (5-FC) in the drinking water of mice. Negative selection and removal of the hdfhr::yfcu SM cassette resulted in selection of PbANKA-PvCSP-VK210+PvTRAP parasites (2207cl3m0). Selected parasites were cloned by the method of limiting dilution resulting in parasite line 2207cl3m0cl1. This double chimeric line PbANKA-PvCS VK210(r)PbCS-PvTRAP(r)Pbtrap, is referred to as PvCSP/PvTRAP parasites and does not contain a SM.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameA fusion of GFP (gfp-mu3) and Luciferase Firefly (LucIAV)
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitegfp (FACS)
Promoter of the selectable markereef1a
Selection (positive) procedureFACS (flowsorting)
Selection (negative) procedureNo
Additional remarks genetic modification
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1133300
Gene Model P. falciparum ortholog PF3D7_1357100
Gene productelongation factor 1-alpha
Gene product: Alternative nameeef1a
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0719300
Gene productbifunctional dihydrofolate reductase-thymidylate synthase, putative
Gene product: Alternative namedhfr/ts
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4