SummaryRMgm-4402
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Successful modification | The parasite was generated by the genetic modification |
The mutant contains the following genetic modification(s) | Gene mutation, Gene mutation, Introduction of a transgene |
Reference (PubMed-PMID number) |
Reference 1 (PMID number) : 29986894 |
MR4 number | |
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Parent parasite used to introduce the genetic modification | |
Rodent Malaria Parasite | P. berghei |
Parent strain/line | P. berghei ANKA |
Name parent line/clone | RMgm-4136 |
Other information parent line | In this parent mutant line the endogenous P. berghei cs gene has been replaced by the P. vivax VK210 cs gene (PVP01_0835600). This has been performed by the GIMO method of transfection. The P. vivax cs gene is under control of the 5'- and 3'-UTR regions of the P. berghei cs gene. The mutant does not contain a drug-selectable marker. The mutant also expresses the fusion protein GFP-Luciferase under control of the constitutive eefia promoter. |
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The mutant parasite was generated by | |
Name PI/Researcher | Atcheson E, Salman AM, Khan SM, Janse CJ, Reyes-Sandoval A |
Name Group/Department | The Jenner Institute, Nuffield Department of Medicine |
Name Institute | University of Oxford, The Henry Wellcome Building for Molecular Physiology |
City | Oxford |
Country | UK |
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Name of the mutant parasite | |
RMgm number | RMgm-4402 |
Principal name | 2207cl3m0cl1 (PvCSP/PvTRAP) |
Alternative name | PbANKA-PvCS VK210(r)PbCS-PvTRAP(r)Pbtrap |
Standardized name | |
Is the mutant parasite cloned after genetic modification | Yes |
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Phenotype | |
Asexual blood stage | Not different from wild type |
Gametocyte/Gamete | Not different from wild type |
Fertilization and ookinete | Not different from wild type |
Oocyst | Not different from wild type |
Sporozoite | Not different from wild type |
Liver stage | Not different from wild type |
Additional remarks phenotype | Mutant/mutation (the PvCSP insert consisted on the N- and C- terminal region from the Salvador I strain (NCBI Reference Sequence XP_001613068.1) flanking the central repeat regions of the circumsporozoite (CSP) VK210 of the Belem strain (GenBank accession number P08677).) |
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Details of the target gene | |||||||||||||||||||||||||||
Gene Model of Rodent Parasite | PBANKA_0403200 | ||||||||||||||||||||||||||
Gene Model P. falciparum ortholog | PF3D7_0304600 | ||||||||||||||||||||||||||
Gene product | circumsporozoite (CS) protein | ||||||||||||||||||||||||||
Gene product: Alternative name | CSP | ||||||||||||||||||||||||||
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Details of the genetic modification | |||||||||||||||||||||||||||
Short description of the mutation | The P. berghei cs gene replaced by P. vivax cs VK210 (PVP01_0835600) | ||||||||||||||||||||||||||
Inducable system used | No | ||||||||||||||||||||||||||
Short description of the conditional mutagenesis | Not available | ||||||||||||||||||||||||||
Additional remarks inducable system | |||||||||||||||||||||||||||
Type of plasmid/construct | (Linear) plasmid double cross-over | ||||||||||||||||||||||||||
PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||||||||||
Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||||||||||
Plasmid/construct map | |||||||||||||||||||||||||||
Plasmid/construct sequence | |||||||||||||||||||||||||||
Restriction sites to linearize plasmid | |||||||||||||||||||||||||||
Selectable marker used to select the mutant parasite | hdhfr/yfcu | ||||||||||||||||||||||||||
Promoter of the selectable marker | eef1a | ||||||||||||||||||||||||||
Selection (positive) procedure | No | ||||||||||||||||||||||||||
Selection (negative) procedure | 5-fluorocytosine (5-FC) | ||||||||||||||||||||||||||
Additional remarks genetic modification | The double chimeric line PvCSP/PvTRAP in which both the csp (PBANKA_040320) and the trap (PBANKA_134980) gene of P. berghei were replaced with csp (PVP01_0835600; PVX_119355) and trap (PVP01_1218700; XP_001614147.1) genes of P. vivax was generated by replacing the Pbtrap with the Pvtrap in a single chimeric line in which the Pbcsp had been previously replaced by the VK210 allele of Pvcsp. The single chimeric line, PbANKA-PvCS VK210(r)PbCS (line 2196cl1), had been generated using the gene insertion/marker out (GIMO) based transfection technology (RMgm-4136) and is free of a drug-selectable marker. In addition, it contains the GFP-Luciferase fusion gene as a reporter. The absence of a drug-selectable marker allowed for replacing the Pbtrap gene with the Pvtrap gene in parasites of the PbANKA-PvCS VK210(r)PbCS line in a single transfection experiment using the trap-replacement construct described by Bauza et al. (2014) (RMgm-1103). This construct contains a synthetic trap allele composed of the protein-coding sequence of P. vivax TRAP (accession number XM_001614097) from the Salvador I strain, which was codon optimized for expression in P. berghei using the GeneOptimizer software. In addition, this construct contains a positive/negative selectable marker (SM) cassette with the hdfhr::yfcu fusion gene. Transfection of PbANKA-PvCS VK210(r)PbCS parasites with the trap-replacement construct and positive selection with pyrimethamine was performed using standard methods for transfection of P. berghei. This resulted in selection of double chimeric parasites (line 2207). Selected double chimeric parasites were cloned by the method of limiting dilution, resulting in the line PbANKA-PvCSP-VK210+PvTRAP+SM line (2207cl3). Subsequently, the positive-negative SM cassette was recycled from the parasites of line 2207cl3 by applying negative selection by providing 5-fluorocytosine (5-FC) in the drinking water of mice. Negative selection and removal of the hdfhr::yfcu SM cassette resulted in selection of PbANKA-PvCSP-VK210+PvTRAP parasites (2207cl3m0). Selected parasites were cloned by the method of limiting dilution resulting in parasite line 2207cl3m0cl1. This double chimeric line PbANKA-PvCS VK210(r)PbCS-PvTRAP(r)Pbtrap, is referred to as PvCSP/PvTRAP parasites and does not contain a SM. | ||||||||||||||||||||||||||
Additional remarks selection procedure | |||||||||||||||||||||||||||
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Details of the target gene | |||||||||||||||||||||||||||
Gene Model of Rodent Parasite | PBANKA_1349800 | ||||||||||||||||||||||||||
Gene Model P. falciparum ortholog | PF3D7_1335900 | ||||||||||||||||||||||||||
Gene product | thrombospondin-related anonymous protein | sporozoite surface protein 2 | ||||||||||||||||||||||||||
Gene product: Alternative name | sporozoite surface protein 2; SSP2; SSP-2; TRAP | ||||||||||||||||||||||||||
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Details of the genetic modification | |||||||||||||||||||||||||||
Short description of the mutation | The endogenous P. berghei trap gene replaced with the trap gene of P. vivax (PVP01_1218700) | ||||||||||||||||||||||||||
Inducable system used | No | ||||||||||||||||||||||||||
Short description of the conditional mutagenesis | Not available | ||||||||||||||||||||||||||
Additional remarks inducable system | |||||||||||||||||||||||||||
Type of plasmid/construct | (Linear) plasmid double cross-over | ||||||||||||||||||||||||||
PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||||||||||
Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||||||||||
Plasmid/construct map | |||||||||||||||||||||||||||
Plasmid/construct sequence | |||||||||||||||||||||||||||
Restriction sites to linearize plasmid | |||||||||||||||||||||||||||
Selectable marker used to select the mutant parasite | hdhfr/yfcu | ||||||||||||||||||||||||||
Promoter of the selectable marker | pbdhfr | ||||||||||||||||||||||||||
Selection (positive) procedure | pyrimethamine | ||||||||||||||||||||||||||
Selection (negative) procedure | 5-fluorocytosine (5-FC) | ||||||||||||||||||||||||||
Additional remarks genetic modification | A codon-optimized gene of P. vivax TRAP (UniProt A5K806, residues Asp25 to Lys493) was used. A synthetic allele composed of the protein-coding sequence of P. vivax TRAP (accession number XM_001614097) from the Salvador I strain, which was codon optimized for expression in P. berghei using the GeneOptimizer software, which evaluates factors that can compromise mRNA stability, such as ribosomal binding sites, extreme GC content, cryptic splice and consensus sites, repeats, and secondary structures (Invitrogen, United Kingdom). The double chimeric line PvCSP/PvTRAP in which both the csp (PBANKA_040320) and the trap (PBANKA_134980) gene of P. berghei were replaced with csp (PVP01_0835600; PVX_119355) and trap (PVP01_1218700; XP_001614147.1) genes of P. vivax was generated by replacing the Pbtrap with the Pvtrap in a single chimeric line in which the Pbcsp had been previously replaced by the VK210 allele of Pvcsp. The single chimeric line, PbANKA-PvCS VK210(r)PbCS (line 2196cl1), had been generated using the gene insertion/marker out (GIMO) based transfection technology (RMgm-4136) and is free of a drug-selectable marker. In addition, it contains the GFP-Luciferase fusion gene as a reporter. The absence of a drug-selectable marker allowed for replacing the Pbtrap gene with the Pvtrap gene in parasites of the PbANKA-PvCS VK210(r)PbCS line in a single transfection experiment using the trap-replacement construct described by Bauza et al. (2014) (RMgm-1103). This construct contains a synthetic trap allele composed of the protein-coding sequence of P. vivax TRAP (accession number XM_001614097) from the Salvador I strain, which was codon optimized for expression in P. berghei using the GeneOptimizer software. In addition, this construct contains a positive/negative selectable marker (SM) cassette with the hdfhr::yfcu fusion gene. Transfection of PbANKA-PvCS VK210(r)PbCS parasites with the trap-replacement construct and positive selection with pyrimethamine was performed using standard methods for transfection of P. berghei. This resulted in selection of double chimeric parasites (line 2207). Selected double chimeric parasites were cloned by the method of limiting dilution, resulting in the line PbANKA-PvCSP-VK210+PvTRAP+SM line (2207cl3). Subsequently, the positive-negative SM cassette was recycled from the parasites of line 2207cl3 by applying negative selection by providing 5-fluorocytosine (5-FC) in the drinking water of mice. Negative selection and removal of the hdfhr::yfcu SM cassette resulted in selection of PbANKA-PvCSP-VK210+PvTRAP parasites (2207cl3m0). Selected parasites were cloned by the method of limiting dilution resulting in parasite line 2207cl3m0cl1. This double chimeric line PbANKA-PvCS VK210(r)PbCS-PvTRAP(r)Pbtrap, is referred to as PvCSP/PvTRAP parasites and does not contain a SM. | ||||||||||||||||||||||||||
Additional remarks selection procedure | |||||||||||||||||||||||||||
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Type and details of transgene | |||||||||||||||||||
Is the transgene Plasmodium derived | Transgene: not Plasmodium | ||||||||||||||||||
Transgene name | A fusion of GFP (gfp-mu3) and Luciferase Firefly (LucIAV) | ||||||||||||||||||
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Details of the genetic modification | |||||||||||||||||||
Inducable system used | No | ||||||||||||||||||
Additional remarks inducable system | |||||||||||||||||||
Type of plasmid/construct | (Linear) plasmid double cross-over | ||||||||||||||||||
PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||
Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||
Plasmid/construct map | |||||||||||||||||||
Plasmid/construct sequence | |||||||||||||||||||
Restriction sites to linearize plasmid | |||||||||||||||||||
Selectable marker used to select the mutant parasite | gfp (FACS) | ||||||||||||||||||
Promoter of the selectable marker | eef1a | ||||||||||||||||||
Selection (positive) procedure | FACS (flowsorting) | ||||||||||||||||||
Selection (negative) procedure | No | ||||||||||||||||||
Additional remarks genetic modification | |||||||||||||||||||
Additional remarks selection procedure | |||||||||||||||||||
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Other details transgene | |||||||||||||||||||
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Promoter | |||||||||||||||||||
Gene Model of Parasite | PBANKA_1133300 | ||||||||||||||||||
Gene Model P. falciparum ortholog | PF3D7_1357100 | ||||||||||||||||||
Gene product | elongation factor 1-alpha | ||||||||||||||||||
Gene product: Alternative name | eef1a | ||||||||||||||||||
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3'-UTR | |||||||||||||||||||
Gene Model of Parasite | PBANKA_0719300 | ||||||||||||||||||
Gene product | bifunctional dihydrofolate reductase-thymidylate synthase, putative | ||||||||||||||||||
Gene product: Alternative name | dhfr/ts | ||||||||||||||||||
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Insertion/Replacement locus | |||||||||||||||||||
Replacement / Insertion | Replacement locus | ||||||||||||||||||
Gene Model of Parasite | PBANKA_0306000 | ||||||||||||||||||
Gene product | 6-cysteine protein | ||||||||||||||||||
Gene product: Alternative name | 230p | ||||||||||||||||||
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