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Details of the target gene |
Gene Model of Rodent Parasite |
PBANKA_1349800
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Gene Model P. falciparum ortholog |
PF3D7_1335900
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Gene product | thrombospondin-related anonymous protein | sporozoite surface protein 2 |
Gene product: Alternative name | sporozoite surface protein 2; SSP2; SSP-2; TRAP |
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Details of the genetic modification |
Short description of the mutation | The endogenous P. berghei trap gene replaced with the ortholog of P. vivax |
Inducable system used | No |
Short description of the conditional mutagenesis | Not available |
Additional remarks inducable system |
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Type of plasmid/construct | (Linear) plasmid double cross-over |
PlasmoGEM (Sanger) construct/vector used | No |
Modified PlasmoGEM construct/vector used | No
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Plasmid/construct map |
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Plasmid/construct sequence |
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Restriction sites to linearize plasmid |
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Selectable marker used to select the mutant parasite | hdhfr/yfcu |
Promoter of the selectable marker | pbdhfr |
Selection (positive) procedure | pyrimethamine |
Selection (negative) procedure | No |
Additional remarks genetic modification | A codon-optimized gene of P. vivax TRAP (UniProt A5K806, residues Asp25 to Lys493) was used.
A synthetic allele composed of the protein-coding sequence of P. vivax TRAP (accession number XM_001614097) from the Salvador I strain, which was codon optimized for expression in P. berghei using the GeneOptimizer software, which evaluates factors that can compromise mRNA stability, such as ribosomal binding sites, extreme GC content, cryptic splice and consensus sites, repeats, and secondary structures (Invitrogen, United Kingdom).
See the paper of details of generation of the construct using phage recombinase-mediated engineering of Plasmodium DNA in E. coli. |
Additional remarks selection procedure | |
Primer information: Primers used for amplification of the target sequences
Primer information: Primers used for amplification of the target sequences
Sequence Primer 1 | |
Additional information primer 1 | |
Sequence Primer 2 | |
Additional information primer 2 | |
Sequence Primer 3 | |
Additional information primer 3 | |
Sequence Primer 4 | |
Additional information primer 4 | |
Sequence Primer 5 | |
Additional information primer 5 | |
Sequence Primer 6 | |
Additional information primer 6 | |
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