RMgmDB - Rodent Malaria genetically modified Parasites

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Summary

RMgm-5370
Malaria parasiteP. yoelii
Genotype
DisruptedGene model (rodent): PY17X_1126500; Gene model (P.falciparum): PF3D7_0626300; Gene product: 3-oxoacyl-acyl-carrier protein synthase I/II (FabB/F)
Transgene
Transgene not Plasmodium: Ovalbumin (OVA ) fused to HEP17/EXP1
Promoter: Gene model: PY17X_0928700; Gene model (P.falciparum): PF3D7_1121600; Gene product: exported protein 1 (EXP1; Hep17)
3'UTR: Gene model: PY17X_0928700; Gene product: exported protein 1 (EXP1; Hep17)
Replacement locus: Gene model: PY17X_1126500; Gene product: 3-oxoacyl-acyl-carrier protein synthase I/II (FabB/F)
Transgene
Transgene not Plasmodium: GFP-Luciferase
Promoter: Gene model: PBANKA_1133300; Gene model (P.falciparum): PF3D7_1357100; Gene product: elongation factor 1-alpha (eef1a)
3'UTR: Gene model: PBANKA_0719300; Gene product: bifunctional dihydrofolate reductase-thymidylate synthase, putative (dhfr/ts)
Replacement locus: Gene model: PY17X_0306600; Gene product: 6-cysteine protein (P230p; 230p)
Phenotype Asexual bloodstage;
Last modified: 6 January 2024, 21:17
  *RMgm-5370
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene disruption, Introduction of a transgene, Introduction of a transgene
Reference (PubMed-PMID number) Not published (yet)
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. yoelii
Parent strain/lineP. y. yoelii 17XNL
Name parent line/clone RMgm-689
Other information parent lineA reference “wild type” Py17XNL parasite line 1971cl1 (RMgm-689; PyGFP-luccon). This line contains the fusion gene gfp-luciferase gene under control of the constitutive eef1α promoter integrated into the silent p230p gene locus (PY17X_0306600) and does not contain a drug-selectable marker.
The mutant parasite was generated by
Name PI/ResearcherKolli SK, Couper K, Janse CJ
Name Group/DepartmentLeiden malaria Research Group, Parasitology Department
Name InstituteLeiden University Medical Center (LUMC)
CityLeiden
CountryThe Netherlands
Name of the mutant parasite
RMgm numberRMgm-5370
Principal name2936cl2
Alternative nameΔPyFabBF-OVA::Hep17(Hep17)
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNormal blood stage development/multiplication. Expression of OVA in asexual blood stages was shown by Western and immunofluorescence analyses.OVA::HEP17 expression at the parasitophorous vacuole membrane of blood stages.
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
OocystNot tested
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses ovalbumin (OVA) fused to Hep17/EXP1 (PY17X_0928700), a parasithophourous vacuole membrane (PVM) protein. The fusion gene ova::hep17 was under control of the hep17 regulatory 5’- and 3’-UTR sequences. The OVA::HEP17 expression cassette was introduced into into the fabb/f gene locus (PY17X_1126500) in the genome of the reference parent P. yoelii XNL line 1971cl1, that expresses the reporter fusion gene GFP-luciferase

Protein (function)

The gene encoding ovalbumin (OVA) was introduced into the fabb/f gene locus. FabB/F. FABB/F is an enzyme of the bacterial like type II fatty acid biosynthesis (FAS-II) pathway. FABB/F is not essential for blood stage development, mosquito stage development and development into maturing liver stages. It is, however, important (but not essential role) in the formation of infective liver stage merozoites.

Phenotype

Normal blood stage development/multiplication. Expression of OVA in asexual blood stages was shown by Western and immuno-fluorescence analyses. OVA::HEP17 expression at the parasitophorous vacuole membrane. We have previously shown that transgenic parasites expressing OVA fused to Hep17 induces strong OT-I and OT-II responses

Additional information
To generate transgenic P. yoelii mutant expressing ovalbumin (OVA) fused to Hep17/EXP1 of P. yoelii (PY17X_0928700) under the control of P. yoelii hep17 promoter, we generated DNA construct pL2244. First (step1), the promoter of hep17 (1.37 kb upstream of the start codon) and the signal peptide (SP) sequence of hep17 (bp 1-81) were PCR-amplified from wild-type P. yoelii genomic DNA and cloned into AflII/KpnI restriction sites of plasmid pL1980 that has sequences targeting the 3’ and 5’ regions of the fabb/f gene of P. yoelii (PY17X_1126500). Second (step 2), the remainder of the hep17 open reading frame (ORF) after the SP (bp 82-785), along with ∼800-bp of the 3′-UTR, was PCR-amplified and then cloned at MunI/KpnI restriction sites of the plasmid made in step 1. Third, the ORF of OVA, which was PCR-amplified from pL1884 was cloned into MunI/ BglI digested plasmid made in step 2. Finally, the hdhfr selectable marker (SM) cassette was amplified from pL0005 (MRA-774, deposited to the BEI Resources Repository) and cloned into KpnI-digested plasmid made in step 3, resulting in the final construct pL2244. In this construct the hdhfr SM is under control of the eef1a promote and the 3’UTR of Pbdhfr/ts. This construct was linearized using EcoRI/HindIII sites before transfection Transfection (exp. 2936), selection and cloning of transformed parasites was performed using standard genetic modification technologies using 1971cl1 as the parent P. yoelii XNL parasite line

Other mutants


  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PY17X_1126500
Gene Model P. falciparum ortholog PF3D7_0626300
Gene product3-oxoacyl-acyl-carrier protein synthase I/II
Gene product: Alternative nameFabB/F
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct used(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Partial or complete disruption of the geneComplete
Additional remarks partial/complete disruption
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationTo generate transgenic P. yoelii mutant expressing ovalbumin (OVA) fused to Hep17/EXP1 of P. yoelii (PY17X_0928700) under the control of P. yoelii hep17 promoter, we generated DNA construct pL2244. First (step1), the promoter of hep17 (1.37 kb upstream of the start codon) and the signal peptide (SP) sequence of hep17 (bp 1-81) were PCR-amplified from wild-type P. yoelii genomic DNA and cloned into AflII/KpnI restriction sites of plasmid pL1980 that has sequences targeting the 3’ and 5’ regions of the fabb/f gene of P. yoelii (PY17X_1126500). Second (step 2), the remainder of the hep17 open reading frame (ORF) after the SP (bp 82-785), along with ∼800-bp of the 3′-UTR, was PCR-amplified and then cloned at MunI/KpnI restriction sites of the plasmid made in step 1. Third, the ORF of OVA, which was PCR-amplified from pL1884 was cloned into MunI/ BglI digested plasmid made in step 2. Finally, the hdhfr selectable marker (SM) cassette was amplified from pL0005 (MRA-774, deposited to the BEI Resources Repository) and cloned into KpnI-digested plasmid made in step 3, resulting in the final construct pL2244. In this construct the hdhfr SM is under control of the eef1a promote and the 3’UTR of Pbdhfr/ts. This construct was linearized using EcoRI/HindIII sites before transfection Transfection (exp. 2936), selection and cloning of transformed parasites was performed using standard genetic modification technologies using 1971cl1 as the parent P. yoelii XNL parasite line
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameOvalbumin (OVA ) fused to HEP17/EXP1
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationTo generate transgenic P. yoelii mutant expressing ovalbumin (OVA) fused to Hep17/EXP1 of P. yoelii (PY17X_0928700) under the control of P. yoelii hep17 promoter, we generated DNA construct pL2244. First (step1), the promoter of hep17 (1.37 kb upstream of the start codon) and the signal peptide (SP) sequence of hep17 (bp 1-81) were PCR-amplified from wild-type P. yoelii genomic DNA and cloned into AflII/KpnI restriction sites of plasmid pL1980 that has sequences targeting the 3’ and 5’ regions of the fabb/f gene of P. yoelii (PY17X_1126500). Second (step 2), the remainder of the hep17 open reading frame (ORF) after the SP (bp 82-785), along with ∼800-bp of the 3′-UTR, was PCR-amplified and then cloned at MunI/KpnI restriction sites of the plasmid made in step 1. Third, the ORF of OVA, which was PCR-amplified from pL1884 was cloned into MunI/ BglI digested plasmid made in step 2. Finally, the hdhfr selectable marker (SM) cassette was amplified from pL0005 (MRA-774, deposited to the BEI Resources Repository) and cloned into KpnI-digested plasmid made in step 3, resulting in the final construct pL2244. In this construct the hdhfr SM is under control of the eef1a promote and the 3’UTR of Pbdhfr/ts. This construct was linearized using EcoRI/HindIII sites before transfection Transfection (exp. 2936), selection and cloning of transformed parasites was performed using standard genetic modification technologies using 1971cl1 as the parent P. yoelii XNL parasite line.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PY17X_0928700
Gene Model P. falciparum ortholog PF3D7_1121600
Gene productexported protein 1
Gene product: Alternative nameEXP1; Hep17
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PY17X_0928700
Gene productexported protein 1
Gene product: Alternative nameEXP1; Hep17
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PY17X_1126500
Gene product3-oxoacyl-acyl-carrier protein synthase I/II
Gene product: Alternative nameFabB/F
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP-Luciferase
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modification
Additional remarks selection procedureThis reporter mutant expressing GFP-Luciferase does not contain a drug-selectable marker.
The mutant has been generated in the reference line GIMOPy17x (RMgm-688). The GIMO mother line is used for introduction of transgenes into the modified 230p locus through transfection with constructs that target the 230p locus. These constructs insert into the 230p locus (‘gene insertion’), thereby removing the hdhfr::yfcu selectable marker (‘marker out’) from the genome of the mother lines. Transgenic parasites that are marker-free are subsequently selected by applying negative drug selection using 5-FC. This selection procedure is performed in vivo in mice.
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1133300
Gene Model P. falciparum ortholog PF3D7_1357100
Gene productelongation factor 1-alpha
Gene product: Alternative nameeef1a
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0719300
Gene productbifunctional dihydrofolate reductase-thymidylate synthase, putative
Gene product: Alternative namedhfr/ts
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PY17X_0306600
Gene product6-cysteine protein
Gene product: Alternative nameP230p; 230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4