RMgmDB - Rodent Malaria genetically modified Parasites

Back to search results

Summary

RMgm-4062
Malaria parasiteP. berghei
Genotype
Transgene
Transgene not Plasmodium: ORP1 (PBANKA_0902500) fused to GFP
Promoter: Gene model: PBANKA_0902500; Gene model (P.falciparum): PF3D7_1146600; Gene product: oocyst rupture protein 1, putative | CCAAT-box DNA binding protein subunit B (ORP1; NFYB)
3'UTR: Gene model: PBANKA_0902500; Gene product: oocyst rupture protein 1, putative; CCAAT-box DNA binding protein subunit B (ORP1; NFYB)
Insertion locus: Gene model: Not available; Gene product: Not available (small subunit ribosomal rna gene (c/d-type unit))
Phenotype Fertilization and ookinete; Oocyst; Sporozoite;
Last modified: 24 December 2016, 18:06
  *RMgm-4062
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 27982038
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone 8417HP
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherCurrà C, Siden-Kiamos I
Name Group/DepartmentFoundation for Research and Technology-Hellas
Name InstituteInstitute of Molecular Biology and Biotechnology
CityHeraklion
CountryGreece
Name of the mutant parasite
RMgm numberRMgm-4062
Principal nameORP1::GFP
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot tested
Gametocyte/GameteNot tested
Fertilization and ookineteIn ookinetes and sporozoites the protein was detected in the cytoplasm but not in the nucleus, whereas in the oocyst stage ORP1 was found in the periphery of the mature cyst. Double-labelling experiments revealed that ORP1::GFP co-localizes with the protein Cap380 (PBANKA_1218100), a protein of the oocyst capsule.
OocystIn ookinetes and sporozoites the protein was detected in the cytoplasm but not in the nucleus, whereas in the oocyst stage ORP1 was found in the periphery of the mature cyst. Double-labelling experiments revealed that ORP1::GFP co-localizes with the protein Cap380 (PBANKA_1218100), a protein of the oocyst capsule.
SporozoiteIn ookinetes and sporozoites the protein was detected in the cytoplasm but not in the nucleus, whereas in the oocyst stage ORP1 was found in the periphery of the mature cyst. Double-labelling experiments revealed that ORP1::GFP co-localizes with the protein Cap380 (PBANKA_1218100), a protein of the oocyst capsule.
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses a C-terminal GFP-tagged version of of ORP1. The gfp::orp1 expression cassette is introduced into the (silent) small subunit ribosomal rna gene (c/d-type unit). The ORP1 N-terminal 365 amino acids is fused to GFP.

Protein (function)
In the paper it is shown that each of two HFD (histone-fold domain)-containing proteins of P. berghei gene (IDs PBANKA_0902500 and PBANKA_1303400), which are named oocyst rupture protein 1 (ORP1) and ORP2, have essential and similar functions in the rupture of the oocyst capsule. Evidence is presented that protein interaction via the HFD is critical for function. ORP1 is located in the oocyst capsule, whereas ORP2 is re-localized from the oocyst cytoplasm to the capsule at the time when mature sporozoites have formed.
The histone-fold domain (HFD) is found in histones and in proteins with a role in transcriptional regulation such as the TATA-box-binding protein-associated factor TAFII and in the CCAAT-binding transcription factor subunits NF-YB and NF-YC. The only example of a protein with a HFD acting outside the nucleus is son-of-sevenless, a protein with multiple domains containing two HFDs, which are involved in binding to lipids. The HFD is B70 amino acids in length and forms three helices separated by small linker sequences. In a heterodimer the proteins are organized in head-to-tail orientation, resulting in a compact ‘handshake’ interaction. In the well-studied NF-Y complex, the heterodimer NF-YB and NF-YC interacts with a third subunit, NF-YA. Although the heterodimer binds DNA in a nonspecific manner, the NF-YA subunit confers binding specificity to the CCAAT motif.
ORP1 (PBANKA_0902500, 950 amino acids) contains a carboxyterminal HFD. ORP2 has an amino-terminal HFD, which is most similar to NF-YC of plants and animals, and HAP5 of yeast. Both HFDs comprises the three a-helices characteristic of the HFD and the short aC helix found in NF-YB/NF-YC proteins. Neither of the two proteins contains any other recognizable motifs and outside the HFD there is only a low degree of similarity comparing the two. The two proteins are considerably longer than NF-YB and NF-YC of animals. BLAST searches of the Plasmodium genome failed to reveal any protein with similarity to NF-YA, which suggested that these two proteins may not be part of a classical NF-Y DNA-binding complex.

Phenotype
Phenotype analyses of a mutant lacking ORP1 (PBANKA_0902500) indicates a role in realease of sporozoites from the oocyst (see RMgm-4059)

In ookinetes and sporozoites the ORP1::GFP protein was detected in the cytoplasm but not in the nucleus, whereas in the oocyst stage ORP1 was found in the periphery of the mature cyst. Double-labelling experiments revealed that ORP1::GFP co-localizes with the protein Cap380 (PBANKA_1218100), a protein of the oocyst capsule.

Additional information
See RMgm-4059 for a mutant lacking ORP1 (PBANKA_0902500).
See RMgm-4060 for a mutant lacking ORP2 (PBANKA_1303400).
See RMgm-4061 for a mutant with a mutated histone-fold domain (HFD) of ORP1. Phenotype analyses of this mutant indicates that HFD is essential for ORF function
See RMgm-4063 for a mutants expresing  a mCherry-tagged version of ORP2. Analyses of these mutants show  that ORP1 is located in the oocyst capsule, whereas ORP2 is re-localized from the oocyst cytoplasm to the capsule at the time when mature sporozoites have formed.

Other mutants
See above


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameORP1 (PBANKA_0902500) fused to GFP
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitepbdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe plasmid used for the generation ORP1::GFP transgenic parasites is a derivative from the pDEF-PbDHFR-SSU (targeting the C/D ssu ribosomal RNA locus by single cross-over integration).

ORP1::GFP is expressed as an extra copy of the gene in the C/D ssu ribosomal RNA locus. The promoter region of 1,232bp was amplified using primers TF50for and TF50rev, and inserted in the sites XhoI–XmaI. The fragment corresponding to the first 365 aa of the coding region were amplified by primers TF260for and TF260rev, and inserted using restriction enzymes XmaI–ApaI. The 482bp ORP1 30-FR region was amplified by TF30 for and TF30rev and inserted in the NheI and NotI restriction sites.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0902500
Gene Model P. falciparum ortholog PF3D7_1146600
Gene productoocyst rupture protein 1, putative | CCAAT-box DNA binding protein subunit B
Gene product: Alternative nameORP1; NFYB
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0902500
Gene productoocyst rupture protein 1, putative; CCAAT-box DNA binding protein subunit B
Gene product: Alternative nameORP1; NFYB
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionInsertion locus
Gene Model of Parasite Not available
Gene productNot available
Gene product: Alternative namesmall subunit ribosomal rna gene (c/d-type unit)
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4