RMgmDB - Rodent Malaria genetically modified Parasites

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Summary

RMgm-1588
Malaria parasiteP. berghei
Genotype
Transgene
Transgene Plasmodium: Gene model: PBANKA_0709000; Gene model (P.falciparum): PF3D7_0821800; Gene product: protein transport protein SEC61 subunit beta, putative (SEC61B; Sec61-beta)
Promoter: Gene model: PBANKA_1133300; Gene model (P.falciparum): PF3D7_1357100; Gene product: elongation factor 1-alpha (eef1a)
3'UTR: Gene model: PBANKA_0719300; Gene product: bifunctional dihydrofolate reductase-thymidylate synthase, putative (dhfr/ts)
Insertion locus: Gene model: Not available; Gene product: Not available (small subunit ribosomal rna gene (c/d-type unit))
Phenotype Asexual bloodstage; Gametocyte/Gamete; Fertilization and ookinete; Oocyst; Sporozoite; Liver stage;
Last modified: 15 September 2016, 16:34
  *RMgm-1588
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 27566438
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherKaiser G; Heussler VT; Stanway RR
Name Group/DepartmentInstitute of Cell Biology
Name InstituteUniversity of Bern
CityBern
CountrySwitzerland
Name of the mutant parasite
RMgm numberRMgm-1588
Principal namePbcGFP-Sec61β
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageExpression of GFP-Sec61β in cytoplasm of asexual blood stages
Gametocyte/GameteExpression of GFP-Sec61β in cytoplasm of gametocytes
Fertilization and ookineteExpression of GFP-Sec61β in cytoplasm of ookinetes
OocystExpression of GFP-Sec61β in cytoplasm of oocysts
SporozoiteExpression of GFP-Sec61β in cytoplasm of sporozoites
Liver stageExpression of GFP-Sec61β in cytoplasm of liver stages.
Live cell imaging of PbcsfGFP-Sec61β parasites showed that during liver stage schizogony, the parasite ER closely surrounds each parasite nucleus and additionally builds a network of ER membranes that extend through the entire cytoplasm. The parasite ER seems to remain as a single interconnected organelle until very shortly before merozoite formation. In merozoites, only the perinuclear ER is present.
It was observed that the parasite ER, in addition to being perinuclear and existing as network-like structures, also forms extensive ER accumulations, which start to appear in trophozoites and become most prominent during the cytomere stage. Most of the ER accumulations disappear during the formation of individual merozoites and accumulations are completely absent at the end of liver stage development when merozoites have formed.
Additional remarks phenotype

Mutant/mutation
The mutant expresses an N-terminal GFP-tagged version of P. berghei Sec61β. The transgene is integrated into the silent c/d-type rrna gene unit under control of the constitutive eef1a promoter. Sec61β is a known marker protein for endoplasmic reticulum (ER).

Two transgenes have been generated: one with Sec61β tagged with GFP and one with superfolder GFP (sfGFP). The sfGFP offers several advantages over GFP for the tagging of ER transmembrane proteins such as Sec61β. GFP has the tendency to weakly dimerize. When this occurs at the cytoplasmic face of the ER membrane, it can induce artificial reorganisation of the entire ER architecture, resulting in huge ER patches known as organised smooth ER. In contrast, sfGFP is a purely monomeric version of GFP that was designed to exhibit improved folding capacities and to be more resistant to denaturation. In this study no differences were observed in the localisation of the two fusion proteins.

Protein (function)
Sec61β is a known marker protein for endoplasmic reticulum (ER).
Sec61β, together with Sec61α and Sec61γ, builds the Sec61 complex, which forms a channel through the ER membrane and is central to co- and post-translational protein translocation. Membrane-bound ribosomes are known to be tightly associated with the Sec61 complex to facilitate co-translational protein transport.

Phenotype
Expression of GFP-Sec61β in cytoplasm of most life cycle stages. In this study expression of GFP-Sec61β in cytoplasm of liver stages is studied in detail.
Live cell imaging of PbcsfGFP-Sec61β parasites showed that during liver stage schizogony, the parasite ER closely surrounds each parasite nucleus and additionally builds a network of ER membranes that extend through the entire cytoplasm. The parasite ER seems to remain as a single interconnected organelle until very shortly before merozoite formation. In merozoites, only the perinuclear ER is present.
It was observed that the parasite ER, in addition to being perinuclear and existing as network-like structures, also forms extensive ER accumulations, which start to appear in trophozoites and become most prominent during the cytomere stage. Most of the ER accumulations disappear during the formation of individual merozoites and accumulations are completely absent at the end of liver stage development when merozoites have formed.

Additional information

Other mutants


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: Plasmodium
Gene Model of Parasite PBANKA_0709000
Gene Model P. falciparum ortholog PF3D7_0821800
Gene productprotein transport protein SEC61 subunit beta, putative
Gene product: Alternative nameSEC61B; Sec61-beta
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitetgdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe construct was based on pL0017 (Malaria Research and Reference Reagent Resource Center-MR4, as part of the BEI Resources Repository, MRA-786), which facilitates constitutive expression of GFP under the eef1αa promoter in P. berghei. Integration takes place by single cross-over homologous recombination into the c-ssu or d-ssu-RNA locus.
PbcGFP-Sec61bβ parasites were generated by amplifying the cDNA of PbSec61bβ (PBANKA_070900) using the primers: 5’-TAT TCT AGA ATG AAT GCT GCC CCA GTA ATC-3’ and 5’-GCG TCT AGA TTA AAT TTT ACT AAT AAT ATG CAG AAT AAC-3’ (restriction sites underlined). Using the XbaI restriction site, the resulting PbSec61b fragment was cloned into a modified version of the pL0017 vector to generate the pcGFP-PbSec61bβ plasmid. The stop codon of gfp in pL0017 was deleted to allow integration downstream of gfp, resulting in the N-terminal fusion protein GFP-PbSec61bβ. To generate PbcsfGFP-Sec61bβ, the sfgfp sequence of psfGFP-Caveolin-C-10 (Addgene) was amplified using primers 5’-GGA TCC ATG GTG AGC AAG GGC GAG-3’ and 5’-TCT AGA CTT GTA CAG CTC GTC CAT GCC-3’. The gfp of pcGFP-PbSec61bβ was exchanged with sfgfp using BamHI and XbaI restriction sites to generate pcsfGFP-PbSec61bβ.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1133300
Gene Model P. falciparum ortholog PF3D7_1357100
Gene productelongation factor 1-alpha
Gene product: Alternative nameeef1a
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0719300
Gene productbifunctional dihydrofolate reductase-thymidylate synthase, putative
Gene product: Alternative namedhfr/ts
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionInsertion locus
Gene Model of Parasite Not available
Gene productNot available
Gene product: Alternative namesmall subunit ribosomal rna gene (c/d-type unit)
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4