RMgmDB - Rodent Malaria genetically modified Parasites

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Summary

RMgm-1365
Malaria parasiteP. berghei
Genotype
MutatedGene model (rodent): PBANKA_1028300; Gene model (P.falciparum): PF3D7_1414400; Gene product: serine/threonine protein phosphatase PP1 (PP1)
Details mutation: The mutant contains a mutated pp1 gene with two FRT sites
Details conditional mutagenesis: The FRTed sequenmce of pp1 is removed in the sporozoite stage by the Flp/FRT system
Transgene
Transgene not Plasmodium: FlpL recombinase of yeast (FlpL)
Promoter: Gene model: PBANKA_1349800; Gene model (P.falciparum): PF3D7_1335900; Gene product: thrombospondin-related anonymous protein | sporozoite surface protein 2 (TRAP; SSP2; SSP-2)
3'UTR: Gene model: PBANKA_1349800; Gene product: sporozoite surface protein 2 thrombospondin-related anonymous protein (sporozoite surface protein 2; SSP2; SSP-2)
Insertion locus: Gene model: PBANKA_1349800; Gene product: sporozoite surface protein 2 thrombospondin-related anonymous protein (sporozoite surface protein 2; SSP2; SSP-2)
PhenotypeNo phenotype has been described
Last modified: 10 January 2016, 13:45
  *RMgm-1365
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene mutation, Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 26735921
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei NK65
Name parent line/clone P. berghei NK65 TRAP/FlpL(-)
Other information parent lineTRAP/FlpL(-)(RMgm-268) is a P. berghei NK65 mutant that expresses the yeast Flpl recombinase under the control of the trap promoter. The mutant does not contain a drug-selectable marker (PubMed: PMID: 19380117).
The mutant parasite was generated by
Name PI/ResearcherZhang M; Nussenzweig V
Name Group/DepartmentDepartment of Pathology
Name InstituteNew York University School of Medicine
CityNew York
CountryUSA
Name of the mutant parasite
RMgm numberRMgm-1365
Principal namepp1 cKO
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageNot different from wild type
Additional remarks phenotype

Mutant/mutation
The mutant is a 'Flp/FRT conditional knock-out mutant' of PP1. The mutant expresses the yeast Flp recombinase under the control of the trap promoter  and contains a mutated pp1 gene that contains two FRT sites. In the mutant the 3’UTR of TRAP together with DHFR flanked by 2 FRT sites were inserted after the stop codon of pp1. This mutant has been generated by replacement of the endogenous pp1 gene by an 'FRTed' pp1 gene in mutant RMgm-268 that expresses Flp.

The pp1 locus locus is disrupted by using the Flp/FRT site-specific recombination (SSR) system (see RMgm-268). Removal of the FRTed pp1 sequence has been achieved by  transmission of the mutant through mosquitoes, thereby activating expression of the Flp recombinase in sporozoites that resulted in the excision of the  pp1 sequence which was flanked by FRT sequences.

Protein (function)
PP1 is a serine/threonine protein phosphatase.

Phenotype
Unsuccessful attempts to disrupt the pp1 gene using standard methods of gene disruption (see RMgm-1038, RMgm-1363) indicate an essential role of PP1 during blood stage development.

In the mutant described here the Flp/FRT site-specific recombination (SSR) system of yeast has been used to silence PP1 expression specifically in sporozoites/liver stages. Removal of the FRTed pp1 sequence has been achieved by  transmission of the mutant through mosquitoes, thereby activating expression of the Flp recombinase in sporozoites that resulted in the excision of the  pp1 sequence which was flanked by FRT sequences.

The pp1 mRNA level was significantly decreased in these mutants and PP1 protein was not detected in Pbpp1 cKO sporozoites. The pp1 cKO parasites completed the life cycle in Anopheles mosquitoes and produced similar numbers of midgut and salivary gland sporozoites as the wild type (wt). This is consistent with the low level of Pbpp1 mRNA in the mosquito vector. The mutant sporozoites then developed into liver stages and produced hepatic merozoites in vitro as shown by IFA. PP1 was disrupted in 96.3% (SD +/- 4.6%) of the hepatic schizonts. Quantitative PCR analysis showed that the liver stage development of Pbpp1 cKO Ssp in HepG2 cells and in mice was indistinguishable from the wild type TRAP/FlpL(-) sporozoites. However, the pp1 cKO merozoites exiting the hepatocytes did not infect the mouse blood. Thus, these findings corroborate the essential role of pp1 in the parasite´s erythrocytic cycle. In addition, the levels of phosphorylation of eIF2α in wt and pp1 cKO sporozoites were indistinguishable by immunoblot. In sum, PP1 is not the enzyme that de-phosphorylates eIF2α-P, which is required for liver stage transformation of sporozoites.

Additional information


Other mutants
RMgm-1038; RMgm-1363:Unsuccessful attempts to disrupt the pp1g gene
RMgm-1039: A mutant expressing a GFP-tagged (C-terminal) form of PP1G


  Mutated: Mutant parasite with a mutated gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1028300
Gene Model P. falciparum ortholog PF3D7_1414400
Gene productserine/threonine protein phosphatase PP1
Gene product: Alternative namePP1
Details of the genetic modification
Short description of the mutationThe mutant contains a mutated pp1 gene with two FRT sites
Inducable system usedFlp/FRT
Short description of the conditional mutagenesisThe FRTed sequenmce of pp1 is removed in the sporozoite stage by the Flp/FRT system
Additional remarks inducable system
Click to view information
Click to hide information
A recently developed P. berghei conditional mutagenesis approach was utilized that uses stage-specific expression of a temperature-sensitive variant of the yeast recombinase, flippase (FlpL) to catalyze the excision of DNA placed between two Flp Recognition Target sequences (FRT) (see RMgm-268). FlpL catalyzes site-specific DNA recombination at a temperature range of 25°-30°C. The mutant is a 'Flp/FRT conditional knock-out mutant' of PP1. The mutant expresses the yeast Flp recombinase under the control of the trap promoter and contains a mutated pp1 gene that contains two FRT sites. In the mutant the 3’UTR of TRAP together with DHFR flanked by 2 FRT sites were inserted after the stop codon of pp1. This mutant has been generated by replacement of the endogenous pp1 gene by an 'FRTed' pp1 gene in mutant RMgm-268 that expresses Flp.
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid EcoRI
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe mutant is a 'Flp/FRT conditional knock-out mutant' of PP1. The mutant expresses the yeast Flp recombinase under the control of the trap promoter and contains a mutated pp1 gene that contains two FRT sites. In the mutant the 3’UTR of TRAP together with DHFR flanked by 2 FRT sites were inserted after the stop codon of pp1. This mutant has been generated by replacement of the endogenous pp1 gene by an 'FRTed' pp1 gene in mutant RMgm-268 that expresses Flp.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameFlpL recombinase of yeast (FlpL)
Details of the genetic modification
Inducable system usedFlp/FRT
Additional remarks inducable system The mutant expresses the yeast FlpL recombinase under the control of the promoter of trap. The mutant does not contain a selectable marker. This marker (the hdhfr gene) has been removed from the genome by using the Flp/FRT site-specific recombination (SSR) system. Removal of the hdhfr gene has been achieved by transmission of the mutant through mosquitoes, thereby activating expression of the FlpL recombinase that resulted in the excision of the hdhfr gene that was flanked by FRT sequences.
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe FlpL coding sequence was flanked by 1.5 kb and 0.6 kb of 5′ and 3′ regulatory sequences of trap, respectively, and associated with a FRTed hdhfr selectable marker containing its own (eef1a) promoter and terminator sequences.
The plasmid was linearized in the 5′ TRAP regulatory sequence to direct gap repair and plasmid integration by single crossover recombination at the homologous chromosomal locus, leaving the endogenous trap gene intact. The plasmid contained the hdhfr selectable marker that is flanked with the 34bp FRT sequences
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1349800
Gene Model P. falciparum ortholog PF3D7_1335900
Gene productthrombospondin-related anonymous protein | sporozoite surface protein 2
Gene product: Alternative nameTRAP; SSP2; SSP-2
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_1349800
Gene productsporozoite surface protein 2 thrombospondin-related anonymous protein
Gene product: Alternative namesporozoite surface protein 2; SSP2; SSP-2
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionInsertion locus
Gene Model of Parasite PBANKA_1349800
Gene productsporozoite surface protein 2 thrombospondin-related anonymous protein
Gene product: Alternative namesporozoite surface protein 2; SSP2; SSP-2
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4