RMgmDB - Rodent Malaria genetically modified Parasites

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Summary

RMgm-1238
Malaria parasiteP. berghei
Genotype
TaggedGene model (rodent): PBANKA_0100600; Gene model (P.falciparum): Not available; Gene product: schizont membrane associated cytoadherence protein (SMAC)
Name tag: mCherry
Phenotype Asexual bloodstage; Gametocyte/Gamete; Liver stage;
Last modified: 18 November 2016, 13:07
  *RMgm-1238
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging
Reference (PubMed-PMID number) Reference 1 (PMID number) : 27851824
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA cl15cy1
Other information parent lineA reference wild type clone from the ANKA strain of P. berghei (PubMed: PMID: 17406255).
The mutant parasite was generated by
Name PI/ResearcherA. Fougère, C.J. Janse, B.M.D. Franke-Fayard
Name Group/DepartmentLeiden Malaria Research Group
Name InstituteLeiden University Medical Center
CityLeiden
CountryThe Netherlands
Name of the mutant parasite
RMgm numberRMgm-1238
Principal name1565cl1
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageThe tagged-protein is exported into the cytoplasm of the host erythrocyte and shows a diffuse or patchy localization in the cytoplasm
Gametocyte/GameteThe tagged-protein is exported into the cytoplasm of the host erythrocyte and shows a diffuse or patchy localization in the cytoplasm
Fertilization and ookineteNot tested
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageThe tagged protein is expressed in late liver stages (schizonts) where it is located in the parasitophorous vacuole.
Additional remarks phenotype

Mutant/mutation

Protein (function)

Phenotype

Additional information

The mutant  expresses a (C-terminal) mCherry-tagged version of Schizont Membrane Associated Cytoadherence protein (SMAC).

The genotype of the parasites has not been analyzed in detail.
Southern analysis of PFG-separated chromosomes (to show integration into the chromosome on which the target gene is located) has been performed. This analysis provided evidence for tagging of the correct gene. The construct used aims at integration of the tagging construct by single-cross-over integration resulting in the presence of a tagged copy of the endogenous gene.

Phenotype analyses of the blood stages by fluorescence microscopy show that the tagged-protein is exported into the cytoplasm of the host erythrocyte and shows a punctuate, vesicle-like localization in the cytoplasm.

Phenotype analyses of mosquito and liver stages showed no expression in mosquito stages (oocysts; sporozoites) whereas  the protein was detected in the PV of maturing liver stages.



Other mutants
See link for other SMAC-mutants


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_0100600
Gene Model P. falciparum ortholog Not available
Gene productschizont membrane associated cytoadherence protein
Gene product: Alternative nameSMAC
Details of the genetic modification
Name of the tagmCherry
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/construct(Linear) plasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
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Plasmid/construct sequence
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CTAAATTGTAAGCGTTAATATTTTGTTAAAATTCGCGTTAAATTTTTGTTAAATCAGCTC
ATTTTTTAACCAATAGGCCGAAATCGGCAAAATCCCTTATAAATCAAAAGAATAGACCGA
GATAGGGTTGAGTGTTGTTCCAGTTTGGAACAAGAGTCCACTATTAAAGAACGTGGACTC
CAACGTCAAAGGGCGAAAAACCGTCTATCAGGGCGATGGCCCACTACGTGAACCATCACC
CTAATCAAGTTTTTTGGGGTCGAGGTGCCGTAAAGCACTAAATCGGAACCCTAAAGGGAG
CCCCCGATTTAGAGCTTGACGGGGAAAGCCGGCGAACGTGGCGAGAAAGGAAGGGAAGAA
AGCGAAAGGAGCGGGCGCTAGGGCGCTGGCAAGTGTAGCGGTCACGCTGCGCGTAACCAC
CACACCCGCCGCGCTTAATGCGCCGCTACAGGGCGCGTCCCATTCGCCATTCAGGCTGCG
CAACTGTTGGGAAGGGCGATCGGTGCGGGCCTCTTCGCTATTACGCCAGCTGGCGAAAGG
GGGATGTGCTGCAAGGCGATTAAGTTGGGTAACGCCAGGGTTTTCCCAGTCACGACGTTG
TAAAACGACGGCCAGTGAGCGCGCGTAATACGACTCACTATAGGGCGAATTGGAGCTCCA
CCGCGGTGGCGGCCGCTCTAGAACTAGTCTTTTACATACATCCTTAACTCTTTTAACAAC
CAGTACACATAATATTTGCAACATTGTGAATATAAAATGAAATATTTAACGCACATATTT
TTTTTTATTATACTTTTTCAATTTATAGTTGATAAATACGATAACAATGGAAAATCATTG
GACAAGTTTTTAAATATACGAAATGAGAGATTTCTAGTAGAATATTATGACGCTAACATT
GATCAATATAATGGCAATCAATCAAAAAAAAAAAAAAATATATATACATATGAATCAAAT
GGTATTTCACAAAACACTACTAATACCAAAAACCAATCAGCAAGTTTTTATGCACAACCT
ACCCACGGCCAATATAAATACCATCGCAATAATGTATATACTCCCTCTGAAGAGTTCAAT
TTTTATAATAGTACGTTCATGGAAAGGCTAAGACATAATTCTAAGATCATTATGGGATCA
TCTGCAGCGATATTTTTTCTTGTCGAAGATTTAGGAATTAGAGCTGTGCTATTTTTAATA
TTTTCTGCTGCTGTACTCGCTTATTTCACTTCCATAGGATCCGGTGGAGGTGGAAGATCC
ATGGTGAGCAAGGGCGAGGAGGATAACATGGCCATCATCAAGGAGTTCATGCGCTTCAAG
GTGCACATGGAGGGCTCCGTGAACGGCCACGAGTTCGAGATCGAGGGCGAGGGCGAGGGC
CGCCCCTACGAGGGCACCCAGACCGCCAAGCTGAAGGTGACCAAGGGTGGCCCCCTGCCC
TTCGCCTGGGACATCCTGTCCCCTCAGTTCATGTACGGCTCCAAGGCCTACGTGAAGCAC
CCCGCCGACATCCCCGACTACTTGAAGCTGTCCTTCCCCGAGGGCTTCAAGTGGGAGCGC
GTGATGAACTTCGAGGACGGCGGCGTGGTGACCGTGACCCAGGACTCCTCCCTGCAGGAC
GGCGAGTTCATCTACAAGGTGAAGCTGCGCGGCACCAACTTCCCCTCCGACGGCCCCGTA
ATGCAGAAGAAGACCATGGGCTGGGAGGCCTCCTCCGAGCGGATGTACCCCGAGGACGGC
GCCCTGAAGGGCGAGATCAAGCAGAGGCTGAAGCTGAAGGACGGCGGCCACTACGACGCT
GAGGTCAAGACCACCTACAAGGCCAAGAAGCCCGTGCAGCTGCCCGGCGCCTACAACGTC
AACATCAAGTTGGACATCACCTCCCACAACGAGGACTACACCATCGTGGAACAGTACGAA
CGCGCCGAGGGCCGCCACTCCACCGGCGGCATGGACGAGCTGTACAAGTAATCTAGAATT
ATTAATATATATGAATATATATACATCGTTGTATGCGTAATATACGTGTAACTGTTTTTT
TTAATTTTTATATTAACTTTTCCTTATACATTTTAATGCCATTAACTAATAATATTTTAC
TTGAAAAAATTCTAAATTTTTATAACTCTAATATAAAATCTGTGAATAATAAAAAATTAG
CATAAAGTACGAATTAAACATCGAATATTTGTTTTAAAGGGGCACACATTATGTGCATAT
AATTTTATTCTTTGAATTTAATTTTTTGCTTATAATTAGATTAAATTAATATAATTTTTT
TATTGAAAATAAAAACTTATTTTAAAAAATTAACAAATGGAAGTTAATGAAAAATACGAA
AAAAGTAAAGGGTTAATTCTTATATGGTCGGTACCGAGCTCGAATTCGATATCGAAATTG
AAGGAAAAAACATCATTTGTGTTTATATGTTTTTTTTTAATTTTTCAACTTTTTTTATTT
AACTATGCTAATCATATTATAAACATTTTAAAAATCAAGTCCAACTATTTATGAATCATT
GAAGAGACAACATAATTATAACAGTAAAAATAATAATAATAATAATAATTTTGTCTTATT
GTTTCAAACATATTATGTTCCATAAATATCTAAATTTTTAATATGGTCATAAATTCATAG
GATTTAATTTATATAAAATATGGCTATTCATACTAGCCATTTTATGTGTGTAAAGTTTTT
TTTTTCTGAACAAAAAATAAAATGTTCATAATTTTAGCTATTTACATGCATGTGCATGCA
CAAAAAAAAATATGCACACAACATACACATTTTTACAGTTATAAATACAATCAATTGGTA
TAAATATATAAGTAAGAAAAACGGGATCAAAGCTAGCTTCTGTATTTCCGCTAGACAGCC
ATCTCCATCTGGATTCGTCCGTGCGGGACGTAGCCCACGACCTCAAAATCCTCGGCGGTG
AAATCGTCGATTTCCTTGATGCGTTCCTTGTTGAGGATGTTCACAATGGGGAACGGTCTC
GGTTCTCTCCGCAGCTGCTCTTTTAAAGCCTCGACATGGTTCGTGTAGACATGCGTGTTC
CCCATGAAGTGAATGAACTCCTTAGGTTTTAGGTTGCAGACGTGTGCAACCATGAGCGTC
AAAAGCGAATAGGAAGCGATGTTGAAGGGGACGCCGAGGCCGACATCGCACGACCGCTGA
TACATGATGCACGACAGCTCCTTCTGGTCGTTCACGTAGAACTGGCACAACAAGTGACAA
GGCGGCAGCGCCATTTCGTCCAGCGCTGCAGGATTCCAGGCAGTCATGAGCATGCGACGA
TCTGTTGGATTCGTTCTCAGCATCTGGATCACATTCTTCAGCTGGTCGACGCCCTGCCCT
GTGTAGTCTGTGTGCATGTCTTTGTATGCCGCGCCGAAGTGTCTCCACTGGAAGCCGTAG
CCCGGGCCGATGTCTCCGACCTCTCGGTGGGGGAGATTGCGCGAATCGAGGAACTCGCGT
GTCACATTCTTGTCCCAGATCTTCACGCCCTTCTCAGAAAGATGGTTTGCGTTCGTGTCG
CCGCGAATGAACCACAGCAACTCTTCGAGGACCCCTTTCCAGAACACACGCTTTGTGGTG
AGAAGTGGAAAGGCCTGATCCAGCGAGTAGCGCATAGTGCAGCCGAATTTGGAGATGACA
CCAACGCCCGTTCGGTCATCCATTGTCCTTCCATTGTTAATAATGTCGGCAATGAGATCA
AGGTACTGGAACTCTTCATGGCCTCTAAAGTGAACATGCGGAACGGCCCGAATCAGTTCC
TTTTGCTCGCGTTTTTTCCGGTCTTCTTCGTCCATCCACGCCAACACCGGGGCAATGGCT
GCGGCCGAAGAAGGAGCCTGCAACCCGTGCACGGGAGTTGTCTCCCTCGTGGACGTCAAG
GAGCTCATTGCGTTGCTCGGTTCCGCAGTGGCTGCGTCGTCAGTCTTCCTTCTCTTCTCG
AGAACCACAAAGTCGTAGGGAACCCCGTTGTCTGAGAAGGTCTTGGAAATGAAGATGGGT
CGATACGTCGCTTCATTGTCCTTCTCTCTTCCGAGCTCCGGACAAAAGGGAACGAACACA
GACTCGGCAGGAGCTGCAGCCTGCGCAGCAGTTGATTTGTTTGAAAGAATGTCATCTCCG
GGGAACGCAGGGAAGAAAACGTCGCACGGAAACTCGCGGGCTACACGCGTGATGTACAGG
TGAGAGGCAACGCCCAGAGACAGCGCTGCCTCGTACAGTCCCGCTCCTCCCACGACAAAA
ATCTGGTCGACAGAATCCTTGTACTCTTCCTCCAGAAGGCTGAGAGCTGCTGGGAGTGAA
GCACAGACTCGGACGCGCTGCTGGCCTTCAGCTTGAGGCTTCTCCGCCGCAATGTCTTCT
TCTTTGAGGGAAGAGGAAACGACGATGTTCAATCTGTCCACGAGGGGTCTAAACTTTCGA
GGCATGCTTTCCCAGGTTTTCCGTCCCATGACAACGGCGTTGAATCTCTTGCCGACTGAT
GGAGAGGGAAGTCCAGAGTCGCCCGTCTTTGCAAATTTCCTGGGAAGCCACCCGTTCAGG
CGACTGGCTTCTTCGGGCGTCGTTTTTGTCACACGAGAAAAGTGTTTGAAATCTGTGGTC
AAGTGGGGCCACGGGAGGCCGTTGTTGATGCCGATGCCCCTCTTGGGGGTCATCGCGACG
ACCAGACACACCGGTTTATGCATTGATCCTTTGTAACATTTAGGTGTGTATTTATATATA
TAAGCAATATACAAATGAAAATACTATTATAAAACGGAAACTCAAAAAATGTTGAAACAA
ATAGTCAATTTTTAAAATGAATGTGTAAATTGTTTAAGTTTTATGACAAAAAAAGGAAAA
GTGTATATAAAATAAAAATTGGAAAAAATTTATATATTACATGCCATATAATACCATTTA
TTTACTATTTATATCTTAATATAAAAAATTGTAGCAAAAATATATAATCGTATTTTATAT
ATTTAATATTATATAACCCCTTAAAAAAAAAAATTTAATTGAAAAAATTTTAATTTATGC
ACTTTTTTATTGTATTATATATATTCCGTTATTTTAATTACACATAAACTTAATAGAAAA
ATTAATTCGCTGCTAAATAAAAATTATAGGGCTATATATGATGGGATCATATTCTATCTT
TCTCTTTTTCAAATYCTTTATATTTTAGAATACAAATCGCTTTAAACAATAAAAAAGAGG
TATATCCTACCCGAATTGACACACACAATAAATAATAAATATATAAATAATAAAAATATA
AATATATAAATTATAAATATATAAATTATATATATAAATATATTAACATGTGTGTAATTT
GTTAAAATTGATATTAAACAGCTTTGCATGGGGAAAGAGTGGCTTTTATAAGCGAATCAT
ATAATACAGTGTTAATTTTAATATATAAAATATAATTTCCTTAAATTGTTATTTAACATT
TTTAATTGCCTACCCARGGTAATATAATATCCAAATGACAATCAAAGATAAATGAAATAC
CGCTCCATTTTTCCTATATATCCATTTTCATTTTGTGTAAATGTTCATAAAATTTTATCA
TATACTCATAAAAAACAGGGGAAAAATGAAAAAATGAACGTCCACCCCGTGTGAATATGC
TCATTTTGTATACTATACATTTTTTTTTATATAATTTATATTTTCCAAATAAAAAAAATG
TTTGTACATGTATATATCAATATTGTGTTATGGCATGATGAAAAACAATTATTTTATTCG
TTTTTAAATTTGTAGAATTTCCCTAAATTATTAATGATTTCATATTATAATATATGTATC
TATATATTTTTAATGTGTAATTCAAAATGGCGAAAAAGAAACAAACCATACTTTATAAGC
AACTCTCTTTGAGCACTTACCATAAAAAATTATACTACTAAATTCAAATTAAATAAAAAA
ATATATATTATAAAATTGGCTTTAATTATTTATAAGCACTTGCTTTGTTTTACTCAAAAA
GTATTGGCATAAGTATAAACATAAAACCAATTTTTCACAAAATATATTATATGTCCATAC
AACTATATCCGAACYTTCAAAACACATCCAAATTTCCATTTACCACATGCAAGCAAAAGG
ATATTAAATAAAAAAAAATTATTTATATTTTCATGATCACTTAAATAATATTTAAAAAAA
AAAGAGACCATATATAAAATGTATAATTTAAATATAGCTAACTTATTAAAAAAAATGAAT
ATTGAGCATATATCCATAATTTAAAACACTTCTATTTTATGTTATTTGATATATAAGTCG
ATAAATTATTGCATGTATGCATATAGACAGATTAATATACACCAAAATAATAAAAATTAT
ATATAGTTCATATATTATTCTGAATAATAAATTAGCTTTCCTCTTAATTCACTTGGTATG
TATATATATATATATATATATATATATATATATATGGATAAATAAATATAAGGTCTATAA
CAGGAAAAAATGTGTATTAACTTTTTTTTATAATTATTTTATATTTTTTCTCCATTTATT
TAAATATGTTAAAATTATTTCCCATTTTATAAACAAAAATTAATCCATAAAATAGCAAAA
TAACAAAATGACAAAATAACAAAAACAAAAAAACGCATTATATGAGTTCATTTTACACAA
TCCAAAGAAAAAGAAAATATGCTTAAAATATTCATAACACACTTTTAAGCTATAAAAATA
TATATATTTATTTGTGTCTATATTACCAACTCAATTTAATAGATGTGTTATGTGATTAAT
TCATACACAAACATACAAAAATAAACACCATTTTTGAAAAGATTAATTTGAAATCATATA
TGTTATTATTATATATTTTTATATCAATGAAATTTAAAAAAATAAAAGGGAAATCAATGT
ATTAAAAATAATTATATGTTATTTTATTTCCACAATATTTATTTATTATTTATTGTTGAC
CTGCAGGCATGCAAGCTTATCGATACCGTCGACCTCGAGGGGGGGCCCGGTACCCAGCTT
TTGTTCCCTTTAGTGAGGGTTAATTGCGCGCTTGGCGTAATCATGGTCATAGCTGTTTCC
TGTGTGAAATTGTTATCCGCTCACAATTCCACACAACATACGAGCCGGAAGCATAAAGTG
TAAAGCCTGGGGTGCCTAATGAGTGAGCTAACTCACATTAATTGCGTTGCGCTCACTGCC
CGCTTTCCAGTCGGGAAACCTGTCGTGCCAGCTGCATTAATGAATCGGCCAACGCGCGGG
GAGAGGCGGTTTGCGTATTGGGCGCTCTTCCGCTTCCTCGCTCACTGACTCGCTGCGCTC
GGTCGTTCGGCTGCGGCGAGCGGTATCAGCTCACTCAAAGGCGGTAATACGGTTATCCAC
AGAATCAGGGGATAACGCAGGAAAGAACATGTGAGCAAAAGGCCAGCAAAAGGCCAGGAA
CCGTAAAAAGGCCGCGTTGCTGGCGTTTTTCCATAGGCTCCGCCCCCCTGACGAGCATCA
CAAAAATCGACGCTCAAGTCAGAGGTGGCGAAACCCGACAGGACTATAAAGATACCAGGC
GTTTCCCCCTGGAAGCTCCCTCGTGCGCTCTCCTGTTCCGACCCTGCCGCTTACCGGATA
CCTGTCCGCCTTTCTCCCTTCGGGAAGCGTGGCGCTTTCTCATAGCTCACGCTGTAGGTA
TCTCAGTTCGGTGTAGGTCGTTCGCTCCAAGCTGGGCTGTGTGCACGAACCCCCCGTTCA
GCCCGACCGCTGCGCCTTATCCGGTAACTATCGTCTTGAGTCCAACCCGGTAAGACACGA
CTTATCGCCACTGGCAGCAGCCACTGGTAACAGGATTAGCAGAGCGAGGTATGTAGGCGG
TGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACACTAGAAGGACAGTATTTGG
TATCTGCGCTCTGCTGAAGCCAGTTACCTTCGGAAAAAGAGTTGGTAGCTCTTGATCCGG
CAAACAAACCACCGCTGGTAGCGGTGGTTTTTTTGTTTGCAAGCAGCAGATTACGCGCAG
AAAAAAAGGATCTCAAGAAGATCCTTTGATCTTTTCTACGGGGTCTGACGCTCAGTGGAA
CGAAAACTCACGTTAAGGGATTTTGGTCATGAGATTATCAAAAAGGATCTTCACCTAGAT
CCTTTTAAATTAAAAATGAAGTTTTAAATCAATCTAAAGTATATATGAGTAAACTTGGTC
TGACAGTTACCAATGCTTAATCAGTGAGGCACCTATCTCAGCGATCTGTCTATTTCGTTC
ATCCATAGTTGCCTGACTCCCCGTCGTGTAGATAACTACGATACGGGAGGGCTTACCATC
TGGCCCCAGTGCTGCAATGATACCGCGAGACCCACGCTCACCGGCTCCAGATTTATCAGC
AATAAACCAGCCAGCCGGAAGGGCCGAGCGCAGAAGTGGTCCTGCAACTTTATCCGCCTC
CATCCAGTCTATTAATTGTTGCCGGGAAGCTAGAGTAAGTAGTTCGCCAGTTAATAGTTT
GCGCAACGTTGTTGCCATTGCTACAGGCATCGTGGTGTCACGCTCGTCGTTTGGTATGGC
TTCATTCAGCTCCGGTTCCCAACGATCAAGGCGAGTTACATGATCCCCCATGTTGTGCAA
AAAAGCGGTTAGCTCCTTCGGTCCTCCGATCGTTGTCAGAAGTAAGTTGGCCGCAGTGTT
ATCACTCATGGTTATGGCAGCACTGCATAATTCTCTTACTGTCATGCCATCCGTAAGATG
CTTTTCTGTGACTGGTGAGTACTCAACCAAGTCATTCTGAGAATAGTGTATGCGGCGACC
GAGTTGCTCTTGCCCGGCGTCAATACGGGATAATACCGCGCCACATAGCAGAACTTTAAA
AGTGCTCATCATTGGAAAACGTTCTTCGGGGCGAAAACTCTCAAGGATCTTACCGCTGTT
GAGATCCAGTTCGATGTAACCCACTCGTGCACCCAACTGATCTTCAGCATCTTTTACTTT
CACCAGCGTTTCTGGGTGAGCAAAAACAGGAAGGCAAAATGCCGCAAAAAAGGGAATAAG
GGCGACACGGAAATGTTGAATACTCATACTCTTCCTTTTTCAATATTATTGAAGCATTTA
TCAGGGTTATTGTCTCATGAGCGGATACATATTTGAATGTATTTAGAAAAATAAACAAAT
AGGGGTTCCGCGCACATTTCCCCGAAAAGTGCCAC
Restriction sites to linearize plasmid NdeI
Selectable marker used to select the mutant parasitetgdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modification
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6