RMgmDB - Rodent Malaria genetically modified Parasites

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Summary

RMgm-1152
Malaria parasiteP. berghei
Genotype
DisruptedGene model (rodent): PBANKA_1219100; Gene model (P.falciparum): PF3D7_0708600; Gene product: inner membrane complex protein 1d, putative (IMC1d)
Transgene
Transgene not Plasmodium: GFP
Promoter: Gene model: PBANKA_1219100; Gene model (P.falciparum): PF3D7_0708600; Gene product: inner membrane complex protein 1d, putative (IMC1d)
3'UTR: Gene model: Not available; Gene product: Not available
Replacement locus: Gene model: PBANKA_1219100; Gene product: inner membrane complex protein 1d
PhenotypeNo phenotype has been described
Last modified: 14 January 2015, 20:15
  *RMgm-1152
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene disruption, Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 25185663
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA 2.34
Other information parent lineP. berghei ANKA 2.34 is a cloned, gametocyte producer line of the ANKA strain (PubMed: PMID: 15137943).
The mutant parasite was generated by
Name PI/ResearcherAl-Khattaf FS; Dessens JT
Name Group/DepartmentPathogen Molecular Biology Department, Faculty of Infectious and Tropical Diseases
Name InstituteLondon School of Hygiene and Tropical Medicine
CityLondon
CountryUK
Name of the mutant parasite
RMgm numberRMgm-1152
Principal namePbIMC1d-nullmutant
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageNot different from wild type
Additional remarks phenotype

Mutant/mutation
The mutant lacks expression of IMC1d (inner membrane complex protein 1d, putative) and expresses GFP under control of the imc1d promoter.
The imc1d gene is deleted using a construct that introduces the gfp gene under the imc1d promoter.

Protein (function)
The three motile and invasive stages (zoites) of Plasmodium species (i.e. ookinetes, sporozoites and merozoites), as well as zoites of other apicomplexan parasites, possess a similar cortical structure termed the pellicle. The pellicle is essentially made up of the plasma membrane and an underlying double membrane structure termed the inner membrane complex (IMC). Closely associated with the IMC on its cytoplasmic side is a network of intermediate filaments termed the subpellicular network (SPN), which supports the pellicular membranes and provides mechanical strength to the cell. Several members of an Apicomplexa-specific family of proteins termed IMC1 proteins have been identified as components of the SPN. Structurally related proteins from ciliates and dinoflagellate algae have since been added to this protein family renamed ‘alveolins’, which now defines the Alveolata infrakingdom. In the genus Plasmodium, the number of members of the alveolin family has risen to 12, which are encoded by conserved and syntenic genes. The alveolin family members display differential expression between the three zoite stages of the parasite, with the largest repertoires present in the ookinete and sporozoite according to proteomic studies. It has been shown in the rodent malaria species Plasmodium berghei that the disruption of individual alveolin family members expressed in sporozoites (PbIMC1a), in ookinetes (PbIMC1b) or in both these zoites (PbIMC1h) results in morphological abnormalities that are accompanied by reduced tensile strength of the zoite stages in which they are expressed. Besides roles in morphogenesis and mechanical strength, the Plasmodium alveolins are also involved in gliding motility in both ookinetes and sporozoites, most likely through interactions with components of the glideosome that are situated within the pellicular cytoplasm.

IMC1d has the most divergent structure of the Plasmodium IMC1 proteins/alveolins and is the only alveolin that possesses only a type 2 domain. PbIMC1d is encoded by a two-exon gene, separated by a 170-bp intron. The gene is annotated as a putative heat shock protein 90 (hsp90) in P. berghei (hsp86 in P. falciparum), but it has no actual sequence similarity to heat shock proteins. The full length protein is composed of 249 amino acids with a calculated Mr of 29,361. The type 2 domain in PbIMC1d is highly conserved.

Phenotype
The successful knock-out of imc1d indicates it has no essential role during blood stage development/multiplication. Phenotype analyses of ookinetes lacking expression of IMC1d showed a normal ookinete development which were motile and had a normal morphology. The mutant produced normal sporozoites that were infective to mice.

Analyses of a mutant expressing GFP-tagged IMC1d (RMgm-1151) showed expression of IMC1d/GFP in zygotes and ookinetes and in the latter it was predominantly distributed at the cell cortex.
These data show that PbIMC1d is specifically expressed in only one of the zoite stages, the ookinete, and is targeted to the pellicle structure/SPN.

Additional information
imc1d mRNA was detected in gametocytes. IMC1d protein, however, was only detected in zygotes/ookinetes. The discrepancy between pbimc1d mRNA and PbIMC1d protein expression in gametocytes strongly points to translational repression of the pbimc1d gene, as is predicted for the majority of alveolins in P. berghei.

Other mutants
RMgm-1151: a mutant expressing GFP-tagged IMC1d
Click on IMC1 for other gene-deletion/tagging mutants targeting IMC1 proteins


  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1219100
Gene Model P. falciparum ortholog PF3D7_0708600
Gene productinner membrane complex protein 1d, putative
Gene product: Alternative nameIMC1d
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct used(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Partial or complete disruption of the geneComplete
Additional remarks partial/complete disruption
Selectable marker used to select the mutant parasitetgdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe entire pbimc1d coding sequence plus ca. 0.55 kb of upstream sequence was PCR amplified from genomic DNA with primers pDNR-IMC1d-F (ACGAAGTTATCAGTCGAGGTACCAGCCAAAATCACCGAAAAG) and pDNR-IMC1d-R(ATGAGGGCCCCTAAGCTTTCAGATATTAAAGGAGCATTATCAATG) and cloned into SalI/HindIII-digested pDNREGFP by in-fusion cloning to give plasmid pDNR-IMC1d/GFP. The 3′ untranslated region of pbimc1d was amplified with primers pLP-IMC1d-F (ATATGCTAGAGCGGCCTAGTAAGTCTTTTGCATTTTATCAATGC) and pLP-IMC1d-R (CACCGCGGTGGCGGCCAAAATATGAAGAAATGACAAAACAGAAG) and the resulting ca. 0.62-kb fragment cloned into NotI-digested pLP-hDHFR by in-fusion cloning to give plasmid pLP-hDHFR/IMC1d. The pbimc1d/gfp-specific sequence from pDNR-IMC1d/GFP was transferred to pLPhDHFR/IMC1d by Cre/loxP recombination to give the final construct pLP-IMC1d/GFP. This plasmid served as template in PCR-based site-directed mutagenesis using primers IMC1d-KO-F (AGCCAGTGATGAGTAAAGGAGAAGAACTTTTCAC) and IMC1d-KO-R (TTACTCATCACTGGCTTATAAAATGCATTTATT). The resulting PCR product was circularised using in-fusion to give plasmid pLP-IMC1d-KO.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitetgdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe imc1d gene is deleted using a construct that introduces the gfp gene under the imc1d promoter.

The entire pbimc1d coding sequence plus ca. 0.55 kb of upstream sequence was PCR amplified from genomic DNA with primers pDNR-IMC1d-F (ACGAAGTTATCAGTCGAGGTACCAGCCAAAATCACCGAAAAG) and pDNR-IMC1d-R(ATGAGGGCCCCTAAGCTTTCAGATATTAAAGGAGCATTATCAATG) and cloned into SalI/HindIII-digested pDNREGFP by in-fusion cloning to give plasmid pDNR-IMC1d/GFP. The 3′ untranslated region of pbimc1d was amplified with primers pLP-IMC1d-F (ATATGCTAGAGCGGCCTAGTAAGTCTTTTGCATTTTATCAATGC) and pLP-IMC1d-R (CACCGCGGTGGCGGCCAAAATATGAAGAAATGACAAAACAGAAG) and the resulting ca. 0.62-kb fragment cloned into NotI-digested pLP-hDHFR by in-fusion cloning to give plasmid pLP-hDHFR/IMC1d. The pbimc1d/gfp-specific sequence from pDNR-IMC1d/GFP was transferred to pLPhDHFR/IMC1d by Cre/loxP recombination to give the final construct pLP-IMC1d/GFP. This plasmid served as template in PCR-based site-directed mutagenesis using primers IMC1d-KO-F (AGCCAGTGATGAGTAAAGGAGAAGAACTTTTCAC) and IMC1d-KO-R (TTACTCATCACTGGCTTATAAAATGCATTTATT). The resulting PCR product was circularised using in-fusion to give plasmid pLP-IMC1d-KO.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1219100
Gene Model P. falciparum ortholog PF3D7_0708600
Gene productinner membrane complex protein 1d, putative
Gene product: Alternative nameIMC1d
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite Not available
Gene productNot available
Gene product: Alternative name
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_1219100
Gene productinner membrane complex protein 1d
Gene product: Alternative name
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4