RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-947
Malaria parasiteP. berghei
Genotype
Transgene
Transgene not Plasmodium: GFP
Promoter: Gene model: PBANKA_0711900; Gene model (P.falciparum): PF3D7_0818900; Gene product: heat shock protein 70 (HSP70)
3'UTR: Gene model: PBANKA_1340000; Gene product: dihydrofolate synthase/folylpolyglutamate synthase, putative (PbDHFS-FPGS)
Replacement locus: Gene model: Not available; Gene product: Not available
Phenotype Asexual bloodstage; Oocyst; Sporozoite; Liver stage;
Last modified: 2 October 2013, 13:44
  *RMgm-947
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 24076174
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherKooij, T.W.A.; Rauch, M.M.; Matuschewski, K.
Name Group/DepartmentParasitology Unit
Name InstituteMax Planck Institute for Infection Biology
CityBerlin
CountryGermany
Name of the mutant parasite
RMgm numberRMgm-947
Principal nameBergreen
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stage(Strong) GFP expression in all stages.
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
Oocyst(Strong) GFP expression in oocysts
Sporozoite(Strong) GFP expression in sporozoites
Liver stage(Strong) GFP expression in liver stages
Additional remarks phenotype

Mutant/mutation
The mutant (strongly) expresses GFP in blood stages (under the control of the constitutive and strong hsp70 promoter). This Bergreen mutant does contain the hdhfr/fcu drug-selectable marker. See RMgm-757 for a similar Bergreen mutant where the drug-selectable marker has been removed by negative selection. The gfp-gene has been integrated by double cross-over integration into a silent intergenic region on chromosome 6.

Phenotype
Blood stages, oocysts, sporozoites and liver stages (strongly) express GFP See RMgm-757 for characterization of GFP expression in all life cycle stages for an independent P. berghei Bergreen mutant).

Additional information
To generate the three isogenic, strongly fluorescent reference parasite lines, Bergreen, Beryellow (RMgm-948), and Berred (RMgm-949), that express high levels of GFP, YFP, and mCherry, respectively,  the mCherry-3xMyc carboxy-terminal tagging sequence was removed from the original pBAT-SIL6 vector (RMgm-757) by restriction digestion with BlpI and HpaI followed by Klenow fill-in and religation of the plasmid. The resulting vector pBAT-G6 harbors the GFP-expression and recyclable drug-selectable cassettes along with integration sequences targeting the silent, intergenic locus on P. berghei chromosome 6 (seeRMgm- 757 for details of the pBAT-SIL6 vector). The GFP from the high-expressing fluorescent protein cassette was exchanged for YFP and mCherry to yield pBAT-Y6 and pBAT-M6, respectively. The plasmids were verified by commercial Sanger sequencing and linearized with ApaLI and AhdI before transfection into wild-type P. berghei strain ANKA parasites.
Isolation of fluorescent parasites was performed by FACS-sorting, with the following adaptation to sort in three different channels. We used excitation wavelengths of 488 nm for GFP and YFP and 561 nm for mCherry parasites. Fluorescence was detected using the following band pass filters: GFP, 513/17 nm; YFP, 530/30nm; mCherry, 610/20 nm.


Other mutants


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/constructPlasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markerpbdhfr
Selection (positive) procedureFACS (flowsorting)
Selection (negative) procedureNo
Additional remarks genetic modificationTo generate the three isogenic, strongly fluorescent reference parasite lines, Bergreen, Beryellow (RMgm-948), and Berred (RMgm-949), that express high levels of GFP, YFP, and mCherry, respectively, the mCherry-3xMyc carboxy-terminal tagging sequence was removed from the original pBAT-SIL6 vector (RMgm-757) by restriction digestion with BlpI and HpaI followed by Klenow fill-in and religation of the plasmid. The resulting vector pBAT-G6 harbors the GFP-expression and recyclable drug-selectable cassettes along with integration sequences targeting the silent, intergenic locus on P. berghei chromosome 6 (see RMgm-757 for details of the pBAT-SIL6 vector). The GFP from the high-expressing fluorescent protein cassette was exchanged for YFP and mCherry to yield pBAT-Y6 and pBAT-M6, respectively. The plasmids were verified by commercial Sanger sequencing and linearized with ApaLI and AhdI before transfection into wild-type P. berghei strain ANKA parasites.
Isolation of fluorescent parasites was performed by FACS-sorting, with the following adaptation to sort in three different channels. We used excitation wavelengths of 488 nm for GFP and YFP and 561 nm for mCherry parasites. Fluorescence was detected using the following band pass filters: GFP, 513/17 nm; YFP, 530/30nm; mCherry, 610/20 nm.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0711900
Gene Model P. falciparum ortholog PF3D7_0818900
Gene productheat shock protein 70
Gene product: Alternative nameHSP70
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_1340000
Gene productdihydrofolate synthase/folylpolyglutamate synthase, putative
Gene product: Alternative namePbDHFS-FPGS
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite Not available
Gene productNot available
Gene product: Alternative name
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4