SummaryRMgm-854
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*RMgm-854| Successful modification | The parasite was generated by the genetic modification |
| The mutant contains the following genetic modification(s) | Gene disruption, Introduction of a transgene, Introduction of a transgene |
| Reference (PubMed-PMID number) |
Reference 1 (PMID number) : 23500072 |
| MR4 number | |
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| Parent parasite used to introduce the genetic modification | |
| Rodent Malaria Parasite | P. berghei |
| Parent strain/line | P. berghei ANKA |
| Name parent line/clone | Not applicable |
| Other information parent line | |
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| The mutant parasite was generated by | |
| Name PI/Researcher | Nagel A; Heussler V |
| Name Group/Department | Institute of Cell Biology |
| Name Institute | University of Bern |
| City | Bern |
| Country | Switzerland |
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| Name of the mutant parasite | |
| RMgm number | RMgm-854 |
| Principal name | PbΔPDH-E1-PFO(LS) |
| Alternative name | |
| Standardized name | |
| Is the mutant parasite cloned after genetic modification | Yes |
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| Phenotype | |
| Asexual blood stage | Not different from wild type |
| Gametocyte/Gamete | Not tested |
| Fertilization and ookinete | Not tested |
| Oocyst | Not different from wild type |
| Sporozoite | Not different from wild type |
| Liver stage | Strongly reduced infectivity of sporozoites. Only a very low number of mice developed blood stage parasitemia after infection with high numbers of sporozoites. Maturing liver stages abort development as a result of a combination of the lack of expression of PDH-E1α and expression of FPO (see additional information) |
| Additional remarks phenotype | Mutant/mutation Other mutants |
Disrupted: Mutant parasite with a disrupted gene| top of page | |||||||||||||||||||||||||
| Details of the target gene | |||||||||||||||||||||||||
| Gene Model of Rodent Parasite | PBANKA_0923800 | ||||||||||||||||||||||||
| Gene Model P. falciparum ortholog | PF3D7_1124500 | ||||||||||||||||||||||||
| Gene product | pyruvate dehydrogenase E1 component subunit alpha | ||||||||||||||||||||||||
| Gene product: Alternative name | PDH E1α; PDH-E1 | ||||||||||||||||||||||||
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| Details of the genetic modification | |||||||||||||||||||||||||
| Inducable system used | No | ||||||||||||||||||||||||
| Additional remarks inducable system | |||||||||||||||||||||||||
| Type of plasmid/construct used | Plasmid double cross-over | ||||||||||||||||||||||||
| PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||||||||
| Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||||||||
| Plasmid/construct map | |||||||||||||||||||||||||
| Plasmid/construct sequence | |||||||||||||||||||||||||
| Restriction sites to linearize plasmid | |||||||||||||||||||||||||
| Partial or complete disruption of the gene | Complete | ||||||||||||||||||||||||
| Additional remarks partial/complete disruption | |||||||||||||||||||||||||
| Selectable marker used to select the mutant parasite | tgdhfr | ||||||||||||||||||||||||
| Promoter of the selectable marker | pbdhfr | ||||||||||||||||||||||||
| Selection (positive) procedure | pyrimethamine | ||||||||||||||||||||||||
| Selection (negative) procedure | No | ||||||||||||||||||||||||
| Additional remarks genetic modification | Initially the coding sequence of PFO (NCBI reference sequence: NP_561079.1; http://ncbi.nlm.nih.gov) was PCR-amplified from C. perfringens genomic DNA (gDNA) using the oligonucleotide primers 5-GCGGATCCATGATAAGATTTAAGAAAACAAAAT-3'and 5'-GCGCGGCCGCATTGTAAGTAATACTAGATCCAGG-3'. The PCR product was cloned via BamHI and NotI restriction sites into the pGFP103464 plasmid(Helm et al., 2010), (resulting plasmid: pL0017.1.4), a modified pL0017 plasmid version (pL0017; MR4 MRA-786) cloned in our laboratory. Additionally the original gfp sequence of the pL0017 plasmid was excised using BamHI and XbaI digestion and was replaced by a double-stranded (ds)DNA oligonucleotide (obtained by annealing the single-stranded (ss)DNA oligonucleotides 5'-GATCCGCGGCCGCCCTAGGAGGTAAGCCTATCCCTAACCCTCTCCTCGGTCTCGATTCTACGTAGT-3' and 5'-CTAGACTACGTAGAATCGAGACCGAGGAGAGGGTTAGGGATAGGCTTACCTCCTAGGGCGGCCGCG-3'), bearing the coding sequence for the V5-tag (bold letters) as well as a NotI restriction site, needed for the cloning of the pfo sequence. For the generation of the PbΔPDH-E1-PFO(LS) P. berghei parasites, the full expression cassette for liver stage-specific PFO::V5 expression was cut out of pSI230-PFOLS plasmid DNA using EcoRI and ligated into the pdh-e1a knockout plasmid described in Deschermeier et al. (2012) (resulting plasmid: pPDH-E1a-KO-PFO(LS)). Genomic integration of this construct results in the replacement of a large part of the PbPDH-E1a open reading frame (ORF) with the PFO::V5- and the GFP-expression cassettes as well as with a cassette mediating constitutive expression of the selection marker TgDHFR-TS. | ||||||||||||||||||||||||
| Additional remarks selection procedure | |||||||||||||||||||||||||
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Primer information: Primers used for amplification of the target sequences
![]() Primer information: Primers used for amplification of the target sequences
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Transgene: Mutant parasite expressing a transgene| top of page | |||||||||||||||||||
| Type and details of transgene | |||||||||||||||||||
| Is the transgene Plasmodium derived | Transgene: not Plasmodium | ||||||||||||||||||
| Transgene name | CDC perfringolysin O (PFO) | ||||||||||||||||||
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| Details of the genetic modification | |||||||||||||||||||
| Inducable system used | No | ||||||||||||||||||
| Additional remarks inducable system | |||||||||||||||||||
| Type of plasmid/construct | Plasmid double cross-over | ||||||||||||||||||
| PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||
| Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||
| Plasmid/construct map | |||||||||||||||||||
| Plasmid/construct sequence | |||||||||||||||||||
| Restriction sites to linearize plasmid | |||||||||||||||||||
| Selectable marker used to select the mutant parasite | tgdhfr | ||||||||||||||||||
| Promoter of the selectable marker | pbdhfr | ||||||||||||||||||
| Selection (positive) procedure | pyrimethamine | ||||||||||||||||||
| Selection (negative) procedure | No | ||||||||||||||||||
| Additional remarks genetic modification | Initially the coding sequence of PFO (NCBI reference sequence: NP_561079.1; http://ncbi.nlm.nih.gov) was PCR-amplified from C. perfringens genomic DNA (gDNA) using the oligonucleotide primers 5-GCGGATCCATGATAAGATTTAAGAAAACAAAAT-3'and 5'-GCGCGGCCGCATTGTAAGTAATACTAGATCCAGG-3'. The PCR product was cloned via BamHI and NotI restriction sites into the pGFP103464 plasmid(Helm et al., 2010), (resulting plasmid: pL0017.1.4), a modified pL0017 plasmid version (pL0017; MR4 MRA-786) cloned in our laboratory. Additionally the original gfp sequence of the pL0017 plasmid was excised using BamHI and XbaI digestion and was replaced by a double-stranded (ds)DNA oligonucleotide (obtained by annealing the single-stranded (ss)DNA oligonucleotides 5'-GATCCGCGGCCGCCCTAGGAGGTAAGCCTATCCCTAACCCTCTCCTCGGTCTCGATTCTACGTAGT-3' and 5'-CTAGACTACGTAGAATCGAGACCGAGGAGAGGGTTAGGGATAGGCTTACCTCCTAGGGCGGCCGCG-3'), bearing the coding sequence for the V5-tag (bold letters) as well as a NotI restriction site, needed for the cloning of the pfo sequence. For the generation of the PbΔPDH-E1-PFO(LS) P. berghei parasites, the full expression cassette for liver stage-specific PFO::V5 expression was cut out of pSI230-PFOLS plasmid DNA using EcoRI and ligated into the pdh-e1a knockout plasmid described in Deschermeier et al. (2012) (resulting plasmid: pPDH-E1a-KO-PFO(LS)). Genomic integration of this construct results in the replacement of a large part of the PbPDH-E1a open reading frame (ORF) with the PFO::V5- and the GFP-expression cassettes as well as with a cassette mediating constitutive expression of the selection marker TgDHFR-TS. | ||||||||||||||||||
| Additional remarks selection procedure | |||||||||||||||||||
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| Other details transgene | |||||||||||||||||||
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| Promoter | |||||||||||||||||||
| Gene Model of Parasite | PBANKA_1003000 | ||||||||||||||||||
| Gene Model P. falciparum ortholog | PF3D7_0405300 | ||||||||||||||||||
| Gene product | liver specific protein 2, putative | sequestrin | 6-cysteine protein | ||||||||||||||||||
| Gene product: Alternative name | LISP2 | ||||||||||||||||||
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| 3'-UTR | |||||||||||||||||||
| Gene Model of Parasite | Not available | ||||||||||||||||||
| Gene product | Not available | ||||||||||||||||||
| Gene product: Alternative name | |||||||||||||||||||
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| Insertion/Replacement locus | |||||||||||||||||||
| Replacement / Insertion | Replacement locus | ||||||||||||||||||
| Gene Model of Parasite | PBANKA_0923800 | ||||||||||||||||||
| Gene product | pyruvate dehydrogenase E1 component subunit alpha | ||||||||||||||||||
| Gene product: Alternative name | PDH E1α; PDH-E1 | ||||||||||||||||||
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Transgene: Mutant parasite expressing a transgene| top of page | |||||||||||||||||||
| Type and details of transgene | |||||||||||||||||||
| Is the transgene Plasmodium derived | Transgene: not Plasmodium | ||||||||||||||||||
| Transgene name | GFP | ||||||||||||||||||
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| Details of the genetic modification | |||||||||||||||||||
| Inducable system used | No | ||||||||||||||||||
| Additional remarks inducable system | |||||||||||||||||||
| Type of plasmid/construct | Plasmid double cross-over | ||||||||||||||||||
| PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||
| Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||
| Plasmid/construct map | |||||||||||||||||||
| Plasmid/construct sequence | |||||||||||||||||||
| Restriction sites to linearize plasmid | |||||||||||||||||||
| Selectable marker used to select the mutant parasite | tgdhfr | ||||||||||||||||||
| Promoter of the selectable marker | pbdhfr | ||||||||||||||||||
| Selection (positive) procedure | pyrimethamine | ||||||||||||||||||
| Selection (negative) procedure | No | ||||||||||||||||||
| Additional remarks genetic modification | Initially the coding sequence of PFO (NCBI reference sequence: NP_561079.1; http://ncbi.nlm.nih.gov) was PCR-amplified from C. perfringens genomic DNA (gDNA) using the oligonucleotide primers 5-GCGGATCCATGATAAGATTTAAGAAAACAAAAT-3'and 5'-GCGCGGCCGCATTGTAAGTAATACTAGATCCAGG-3'. The PCR product was cloned via BamHI and NotI restriction sites into the pGFP103464 plasmid(Helm et al., 2010), (resulting plasmid: pL0017.1.4), a modified pL0017 plasmid version (pL0017; MR4 MRA-786) cloned in our laboratory. Additionally the original gfp sequence of the pL0017 plasmid was excised using BamHI and XbaI digestion and was replaced by a double-stranded (ds)DNA oligonucleotide (obtained by annealing the single-stranded (ss)DNA oligonucleotides 5'-GATCCGCGGCCGCCCTAGGAGGTAAGCCTATCCCTAACCCTCTCCTCGGTCTCGATTCTACGTAGT-3' and 5'-CTAGACTACGTAGAATCGAGACCGAGGAGAGGGTTAGGGATAGGCTTACCTCCTAGGGCGGCCGCG-3'), bearing the coding sequence for the V5-tag (bold letters) as well as a NotI restriction site, needed for the cloning of the pfo sequence. For the generation of the PbΔPDH-E1-PFO(LS) P. berghei parasites, the full expression cassette for liver stage-specific PFO::V5 expression was cut out of pSI230-PFOLS plasmid DNA using EcoRI and ligated into the pdh-e1a knockout plasmid described in Deschermeier et al. (2012) (resulting plasmid: pPDH-E1a-KO-PFO(LS)). Genomic integration of this construct results in the replacement of a large part of the PbPDH-E1a open reading frame (ORF) with the PFO::V5- and the GFP-expression cassettes as well as with a cassette mediating constitutive expression of the selection marker TgDHFR-TS. | ||||||||||||||||||
| Additional remarks selection procedure | |||||||||||||||||||
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| Other details transgene | |||||||||||||||||||
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| Promoter | |||||||||||||||||||
| Gene Model of Parasite | PBANKA_1133300 | ||||||||||||||||||
| Gene Model P. falciparum ortholog | PF3D7_1357100 | ||||||||||||||||||
| Gene product | elongation factor 1-alpha | ||||||||||||||||||
| Gene product: Alternative name | eef1a | ||||||||||||||||||
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| 3'-UTR | |||||||||||||||||||
| Gene Model of Parasite | PBANKA_0719300 | ||||||||||||||||||
| Gene product | bifunctional dihydrofolate reductase-thymidylate synthase, putative | ||||||||||||||||||
| Gene product: Alternative name | dhfr/ts | ||||||||||||||||||
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| Insertion/Replacement locus | |||||||||||||||||||
| Replacement / Insertion | Replacement locus | ||||||||||||||||||
| Gene Model of Parasite | PBANKA_0923800 | ||||||||||||||||||
| Gene product | pyruvate dehydrogenase E1 component subunit alpha | ||||||||||||||||||
| Gene product: Alternative name | PDH E1α; PDH-E1 | ||||||||||||||||||
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