RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-850
Malaria parasiteP. yoelii
Genotype
TaggedGene model (rodent): PY17X_0816300; Gene model (P.falciparum): PF3D7_0911900; Gene product: falstatin | inhibitor of cysteine proteases (ICP; falstatin)
Name tag: RFA tag with an HA epitope and an E. coli DHFR degradation domain (DDD)
Phenotype Asexual bloodstage;
Last modified: 14 December 2013, 22:36
  *RMgm-850
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging
Reference (PubMed-PMID number) Reference 1 (PMID number) : 23421981
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. yoelii
Parent strain/lineP. y. yoelii 17XNL
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherPei Y; Kappe SHI
Name Group/DepartmentSeattle Biomedical Research Institute,
Name InstituteSeattle Biomedical Research Institute,
CitySeattle
CountryUS
Name of the mutant parasite
RMgm numberRMgm-850
Principal namePy-ICP-RFA
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stagePy-ICP-RFA expressed in blood stages (see below for more information).
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
OocystNot tested
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses Py-ICP fused to a Regulated Fluorescent Affinity (RFA) tag containing a GFP cassette and HA epitope tag  (Muralidharan et al., 2011).

In addition to a GFP cassette, the RFA tag contained an HA epitope and an E. coli DHFR degradation domain, which destabilizes the protein in the absence of folate analogs, including trimethoprim (TMP) (Muralidharan et al., 2011).

ICP is conserved among numerous Plasmodium species. However, a Py-ICP ortholog had not been annotated in PlasmoDB (www.plasmodb.org). To determine if Py contained an ICP ortholog, a BLAST search of the Py genome was conducted using Pf-ICP as the query and observed highly conserved nucleotide sequences at the C-terminal region of a 7.3 kb gene, PY03424. It was found that that PY03424 was composed of two separate genes: a single exon gene is termed PY03424* and Py-ICP. The re-annotated Py-ICP gene has 85% and 34% amino acid identity to its orthologs in Pb and Pf, respectively.

Protein (function)
An endogenous cysteine protease inhibitor has been identified in P. falciparum, Pf-ICP (PF3D7_0911900; Falstatin), via a BLAST search of the Pf genome using the Trypanosoma cruzi cysteine protease inhibitor chagasin as a query. A recombinant  Pf-ICP expressed in E. coli was shown to potently inhibit a number of host proteases by in vitro protease activity assays. Additionally, Pf-ICP also inhibited several parasite proteases in these assays, including falcipain-2 and falcipain-3, but not falcipain-1.

Phenotype
Py-ICP-RFA expressed in blood stages

Additional information
To determine if Py-ICP-RFA could be destabilized in vivo, we monitored the average fluorescence intensity of GFP from RFA tagged parasites over time.

TMP was administered in the drinking water of mice 24 hrs prior to inoculation with Py-ICP-RFA infected erythrocytes. Two days post infection drug was removed from a subset of mice, while the remaining mice were maintained on TMP for four additional days. Py-ICP-RFA was propagated in SW mice whose water contained 250µg/ml of TMP (Sigma).

The average fluorescence intensity of GFP from 5x107 Py-ICP-RFA infected erythrocytes was determined at varying time points using a fluorescence microplate reader. After removal of TMP, GFP fluorescence intensity from Py-ICP-RFA parasites decreased over time, reaching a maximum reduction of 30% as compared to TMP stabilized protein by 72 and 96 hr. Protein degradation was also monitored by western blot, which revealed up to a 50% decrease in total ICP protein levels during blood stage replication in vivo. Both the full length and processed form of Py-ICP were reduced following removal of TMP. However, this down-regulation was more pronounced in the processed form, which exhibited more than a 5-fold decrease as compared to a 1.7-fold reduction of full length Py-ICP.

However, this reduction was not sufficient to decrease the viability of the recombinant parasite, as there was no detectable difference in blood stage growth in vivo in the absence of TMP.

Thus, a larger decrease in protein expression is likely necessary to impact parasite replication and reveal a phenotype of ICP depletion in blood stage parasites.

Other mutants
See RMgm-970 for successful disruption of the icp gene!!!
See also RMgm-245, RMgm-397 and RMgm-844 for unsuccessful attempts to disrupt the P. berghei icp gene

See RMgm-845 for a mutant expressing a normal ICP and a quadruple C-myc tagged version of ICP.


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PY17X_0816300
Gene Model P. falciparum ortholog PF3D7_0911900
Gene productfalstatin | inhibitor of cysteine proteases
Gene product: Alternative nameICP; falstatin
Details of the genetic modification
Name of the tagRFA tag with an HA epitope and an E. coli DHFR degradation domain (DDD)
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/constructPlasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitetgdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe regulatable, fluorescent affinity (RFA) tag (Muralidharan et al., 2011) consists of GFPmut2, an E. coli DHFR degradation domain (DDD) and a single HA epitope. A plasmid bearing the RFA tag [kindly provided by Dr. Daniel Goldberg (Washington University School of Medicine, St. Louis, MO)] served as a template for PCR amplification using primers designed with exogenous restriction sites to facilitate its insertion into the pDEF-HsDHFR plasmid (available from the NIAID/ATCC at www.MR4.org, Cat# MRA-774). The product of this ligation is pDEF+RFA. Sequence coding for the C-terminal 207 amino acids (without stop codon) 621 base pairs of the 3’UTR of Py-ICP were PCR amplified from genomic DNA with primers that included exogenous SpeI and NotI restriction sites. These PCR products were combined by splicing by overhang extension SOE PCR, which also introduced an ApaI site between the two products for downstream plasmid linearization prior to transfection (Mikolajczak et al., 2008). This SOE PCR product was digested with NotI and SpeI, and inserted into pDEF+RFA.
The resulting plasmid was linearized by digestion with ApaI and transfected by standard methods (Jongco et al., 2006) to yield a double-crossover replacement of the native Py-ICP locus that enabled expression of a C-terminal RFA tag.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6