RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-845
Malaria parasiteP. yoelii
Genotype
TaggedGene model (rodent): PY17X_0816300; Gene model (P.falciparum): PF3D7_0911900; Gene product: falstatin | inhibitor of cysteine proteases (ICP; falstatin)
Name tag: c-myc
Phenotype Asexual bloodstage; Sporozoite; Liver stage;
Last modified: 14 December 2013, 22:35
  *RMgm-845
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging
Reference (PubMed-PMID number) Reference 1 (PMID number) : 23421981
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. yoelii
Parent strain/lineP. y. yoelii 17XNL
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherPei Y; Kappe SHI
Name Group/DepartmentSeattle Biomedical Research Institute,
Name InstituteSeattle Biomedical Research Institute,
CitySeattle
CountryUS
Name of the mutant parasite
RMgm numberRMgm-845
Principal namePy-ICP-myc
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageICP-myc expressed in blood stages. In maturing schizonts,ICP-myc was diffusely distributed within the parasite but showed punctate areas of stronger stained foci. Free merozoites strongly expressed ICP-myc
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
OocystNot tested
SporozoiteICP-myc expressed in sporozoites (evidence is presented for a location in rhoptries)
Liver stageICP-myc expressed during liver stage development (evidence is presented that during late liver stage development ICP is found in the host hepatocyte cytoplasm)
Additional remarks phenotype

Mutant/mutation
The mutant expresses a normal ICP and a quadruple C-myc tagged version of ICP. Both icp genes are under control of the endogenous icp promoter.

ICP is conserved among numerous Plasmodium species. However, a Py-ICP ortholog had not been annotated in PlasmoDB (www.plasmodb.org). To determine if Py contained an ICP ortholog, a BLAST search of the Py genome was conducted using Pf-ICP as the query and observed highly conserved nucleotide sequences at the C-terminal region of a 7.3 kb gene, PY03424. It was found that that PY03424 was composed of two separate genes: a single exon gene is termed PY03424* and Py-ICP. The re-annotated Py-ICP gene has 85% and 34% amino acid identity to its orthologs in Pb and Pf, respectively.

Protein (function)
An endogenous cysteine protease inhibitor has been identified in P. falciparum, Pf-ICP (PF3D7_0911900; Falstatin), via a BLAST search of the Pf genome using the Trypanosoma cruzi cysteine protease inhibitor chagasin as a query. A recombinant  Pf-ICP expressed in E. coli was shown to potently inhibit a number of host proteases by in vitro protease activity assays. Additionally, Pf-ICP also inhibited several parasite proteases in these assays, including falcipain-2 and falcipain-3, but not falcipain-1. For P. berghei ICP evidence has been presented localisation in sporozoite micronemes and secretion in trails during gliding motility. Evidence has been presented that P. berghei ICP plays a role in hepatocyte invasion and is important in suppressing host cell apoptosis during liver stage development (see RMgm-396)

Phenotype
ICP is expressed in blood stages (see below for more details).
ICP-myc expressed in sporozoites Evidence is presented for a location in rhoptries.
ICP-myc expressed during liver stage development. Evidence is presented that during late liver stage development ICP is found in the host hepatocyte cytoplasm

Additional information
During ring/trophozoite stage, ICP-myc was contained within the parasite but was also partially co-localized with the PVM marker Hep17. Notably, extensions of the PV that projected into the infected erythrocyte were strongly stained for ICP and Hep17. ICP associated with vesicles within the parasite cytoplasm and also localized Py-ICP to the PV. Py-ICP was frequently associated with polymorphic exomembrane structures that appeared segregated in the infected erythrocyte cytoplasm, but might be continuous with the PVM.

Co-immunoprecipitation studies provided evidence for interaction of ICP with yoelipain-2. Epitope tagged Py-ICP consistently co-immunoprecipitated with the cysteine protease yoelipain-2 (PY00783, the ortholog of falcipain-2 and berghepain-2), and was identified by multiple peptide hits in all 5 co-immunoprecipitations. Other co-immunoprecipitated proteins included two ER-associated proteins, PY03267, the putative ortholog for Rab18 (PY01075), and two scaffolding proteins, PY05916 and PY01361.

ICP-myc expressed in sporozoites Evidence is presented for a location in rhoptries. ICP was not detected in gliding trails of sporozoites. For P. berghei ICP evidence has been presented for a micronemal location and presence in gliding trails (RMgm-396) .

During early (4 hr pi) and mid stage (24 hr pi) in vitro liver stage infection, Py-ICP-myc localized within the parasite, but was not observed outside the confines of the parasite compartment or in UIS4 positive projections of the PV. However, during late liver stage development (43 hr pi), Py-ICP was strongly detected in the host hepatocyte cytoplasm. At 2 hr pi, when liver stage parasites are still sporozoite-shaped, Py-ICP was detected inside the parasite only but not in the UIS4-positive PV. Similarly, during mid-liver stage development (16 hr and 24 hr pi), Py-ICP was distributed ubiquitously within the parasite. Py-ICP was also increasingly associated with the PV as indicated by co-localization with the PVM protein UIS4. This suggests that ICP is released into the PV but is not exported beyond the PVM. At 30 hr pi, Py-ICP appeared to be concentrated in vesicular structures that localized to the periphery of all liver stage parasites, close to the PV. A similar distribution was observed in 40% of infected cells during late liver stages (43 hr pi). However, in the majority of late liver stages at 43 hr pi (60%), Py-ICP accumulated in the cytoplasm of the infected hepatocyte, and this was associated with the partial breakdown of the PVM as indicated by discontinuous Hep17 staining

Other mutants
See RMgm-970 for successful disruption of the icp gene!!!


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PY17X_0816300
Gene Model P. falciparum ortholog PF3D7_0911900
Gene productfalstatin | inhibitor of cysteine proteases
Gene product: Alternative nameICP; falstatin
Details of the genetic modification
Name of the tagc-myc
Details of taggingC-terminal
Additional remarks: taggingThe b3D-myc vector(Vaughan et al., 2009) for epitope tagging genes of interest was used. To generate the Py-ICP-myc parasite line, approximately 1.5 kb of upstream of the start codon and the entire coding sequence of the Py-ICP gene (except for its stop codon) was amplified by PCR from 17XNL genomic DNA. This PCR product was cloned upstream in-frame with the quadruple myc tag in 3D-myc. The plasmid was subsequently linearized with BsmI and integrated into the Py 17XNL genome using standard procedures. This integration strategy created two functional copies of the Py-ICP gene, which were both under the control of the endogenous promoter.
Commercial source of tag-antibodies
Type of plasmid/constructPlasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitetgdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe b3D-myc vector(Vaughan et al., 2009) for epitope tagging genes of interest was used. To generate the Py-ICP-myc parasite line, approximately 1.5 kb of upstream of the start codon and the entire coding sequence of the Py-ICP gene (except for its stop codon) was amplified by PCR (the paper does not provide primer sequence information) from 17XNL genomic DNA. This PCR product was cloned upstream in-frame with the quadruple myc tag in 3D-myc. The plasmid was subsequently linearized with BsmI and integrated into the Py 17XNL genome using standard procedures. This integration strategy created two functional copies of the Py-ICP gene, which were both under the control of the endogenous promoter.

ICP is conserved among numerous Plasmodium species. However, a Py-ICP ortholog had not been annotated in PlasmoDB (www.plasmodb.org). To determine if Py contained an ICP ortholog, a BLAST search of the Py genome was conducted using Pf-ICP as the query and observed highly conserved nucleotide sequences at the C-terminal region of a 7.3 kb gene, PY03424. It was found that that PY03424 was composed of two separate genes: a single exon gene is termed PY03424* and Py-ICP. The re-annotated Py-ICP gene has 85% and 34% amino acid identity to its orthologs in Pb and Pf, respectively.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6