RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-754
Malaria parasiteP. berghei
Genotype
Transgene
Transgene Plasmodium: Gene model: PBANKA_0518200; Gene model (P.falciparum): PF3D7_1034400; Gene product: flavoprotein subunit of succinate dehydrogenase (SDHA)
Promoter: Gene model: PBANKA_0518200; Gene model (P.falciparum): PF3D7_1034400; Gene product: flavoprotein subunit of succinate dehydrogenase (SDHA)
3'UTR: Gene model: PBANKA_0518200; Gene product: flavoprotein subunit of succinate dehydrogenase, putative (SDHA)
Insertion locus: Gene model: PBANKA_0518200; Gene product: flavoprotein subunit of succinate dehydrogenase, putative (SDHA)
Phenotype Asexual bloodstage; Fertilization and ookinete; Oocyst; Sporozoite;
Last modified: 14 August 2012, 15:17
  *RMgm-754
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 22628552
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA 2.34
Other information parent lineP. berghei ANKA 2.34 is a cloned, gametocyte producer line of the ANKA strain (PubMed: PMID: 15137943).
The mutant parasite was generated by
Name PI/ResearcherA. Hino; K. Kita
Name Group/DepartmentDepartment of Biomedical Chemistry
Name InstituteGraduate School of Medicine, The University of Tokyo
CityTokyo
CountryJapan
Name of the mutant parasite
RMgm numberRMgm-754
Principal namePbsdha::AGFP
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stagePbsdha::AGFP was detected in trophozoites and schizonts but not in ring forms. GFP signals co-localized with MitoTracker Orange signals
Gametocyte/GameteNot tested
Fertilization and ookinetePbsdha::AGFP was detected in ookinetes. GFP signals co-localized with MitoTracker Orange signals
OocystPbsdha::AGFP was detected in oocysts. GFP signals co-localized with MitoTracker Orange signals
SporozoitePbsdha::AGFP was detected in sporozoites. GFP signals co-localized with MitoTracker Orange signals
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses azamiGFP (AGFP) under control of the 5'- and 3'-UTR region of sdha (flavoprotein subunit of succinate dehydrogenase) and fused the first 60 amino acids of sdha. It is reported that the first 60 amino acids of P. falciparum flavoprotein contains a functional mitochondrial targeting signal The fusion transgene of AGFP and sdha is integrated by single cross-over recombination into the sdha locus resulting in the presence of the transgene and a normal copy of sdha.

Protein (function)
In other eukaryotes, pyruvate dehydrogenase is localized in mitochondria where it links the glycolysis metabolic pathway to TCA cycle, while it is localized in the apicoplast in P. falciparum. Blood-stage P. falciparum have only a single mitochondrion without crista. Such morphologically immature mitochondrion suggests that, unlike other eukaryotes, the blood-stage P. falciparum relies mainly on cytoplasmic glycolysis for their energy metabolism but not on mitochondrial oxidative phosphorylation. P. falciparum express all TCA cycle enzyme genes and most ones for the electron transport chain (ETC). The genes for TCA cycle are up-regulated at mosquito stages. The gametocytes, precursor cells of gametes possess mitochondria with cristae. These data suggest that mitochondrial energy metabolism may have more crucial roles in insect stages than blood stages. The mitochondrial complex II (succinate-ubiquinone reductase: SQR) oxidizes succinate to produce fumarate as a TCA cycle member enzyme. In the anaerobic electron transfer system, complex II carries out fumarate reduction using quinol as an electron donor (quinol-fumarate reductase; QFR), which is the reverse reaction of SQR. Complex II consists of four subunits, flavoprotein (Fp), iron-sulfur cluster protein (Ip) and two small membrane anchor subunits, cytochrome b large (CybL) and small (CybS) subunits. The Fp with molecular mass of 70 kDa has a flavin adenine dinucleotide (FAD) covalently bound to a highly conserved histidine (His) residue. Fp and Ip form catalytic portion of the complex and this portion act as a succinate dehydrogenase (SDH), catalyzing the oxidation of succinate by water-soluble electron acceptors such as phenazine methosulfate (PMS) in SQR, while it acts as a fumarate reductase (FRD), catalyzing electron transfer from water-soluble electron donors such as reduced methylviologen (MV) to fumarate in QFR. FAD in the Fp receives the reducing equivalents from succinate and then transfers it to quinone by SQR activity where the two small membrane anchor subunits are indispensable (10). Thus, complex II functions as a link between the TCA cycle and the ETC, directly. While complex II has such critical roles in energy metabolisms and Fp and Ip subunits genes are substantially conserved in various organisms, two small membrane anchor subunit genes are diverse. However, evidence for the presence of genes in the Plasmodium genome encoding mitochondrial Complex II subunits SDH3 and SDH4 and ATP synthase subunits a and b.

Phenotype
Phenotype analyses of mutants lacking expression of SDHA (RMgm-753) indicate a non-essential function of SDHA for asexual blood stages. Phenotype analyses of these mutants indicate an essential function of SDHA for ookinete and/or oocyst formation. Normal numbers of gametocytes are produced and male gamete formation (exflagellation) is normal. The conversion rate of female gametes to ookinetes in vitro of Pbsdha(-) is significantly reduced to 17% of wild type parasites. No oocysts are formed.
Phenotype analyses of the mutant Pbsdha::AGFP expressing the fusion of AGFP and SDHA indicate expression in blood stage trophozoites and schizonts and in ookinetes, oocysts and sporozoites. GFP signals co-localized with MitoTracker Orange signals

Additional information

Other mutants
RMgm-753: A mutant lacking expression of SDHA


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: Plasmodium
Gene Model of Parasite PBANKA_0518200
Gene Model P. falciparum ortholog PF3D7_1034400
Gene productflavoprotein subunit of succinate dehydrogenase
Gene product: Alternative nameSDHA
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/constructPlasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid BstXI
Selectable marker used to select the mutant parasitetgdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe mutant expresses azamiGFP (AGFP) under control of the 5'- and 3'-UTR region of sdha (flavoprotein subunit of succinate dehydrogenase) and fused the first 60 amino acids of sdha. It is reported that the first 60 amino acids of P. falciparum flavoprotein contains a functional mitochondrial targeting signal The fusion transgene of AGFP and sdha is integrated by single cross-over recombination into the sdha locus resulting in the presence of the transgene and a normal copy of sdha.

Two fragments covering the 5'UTR and the first 60 amino acids (-3229 to +180 bp), and the 3’UTR (1025 bp) of the Pbsdha gene (PBANKA_051820) were amplified with primer pairs 5’UTRB4F/5’UTRB1R and 3’UTRB2F/3’UTRB3R, and P. berghei genomic DNA as template. The Azami Green Fluorescent Protein gene (AGFP) was amplified with the primers AzamiB1F (GGGGACAAGTTTGTACAAAAAAGCAGGCTATGGTGAGTGTGATTAAACC) and AzamiB2R (GGGGACCACTTTGTACAAGAAAGCTGGGTTTACTTGGCCTGACTCGGCA). Each PCR fragment was cloned into pDONRP4-P1R, P1-P2R and P2-P3R vectors by BP clonase reaction (Invitrogen) to generate entry vectors (5UTR/P4P1, AGFP/P1P2 and 3UTR/P2P3). An R4-R3 fragment (Invitrogen) was inserted into the HindIII site of the pBS-DHFR vector to generate an acceptor plasmid (R4R3/pBS-DHFR). The inserts of the entry vectors were transferred to the acceptor plasmid by LR reaction using the Multisite Gateway Three-Fragment Vector Construction Kit (Invitrogen). In the final plasmid (Pbsdha::AGFP), the 5' UTR and the first 60 amino acids of Pbsdha were fused to the AGFP gene. Thus, the expression of the AGFP reporter gene is under the control of the Pbsdha gene promoter. For parasite transfection, the plasmid was digested by BstXI, and the linearized plasmid was integrated into the parasite genome by single crossover homologous recombination.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0518200
Gene Model P. falciparum ortholog PF3D7_1034400
Gene productflavoprotein subunit of succinate dehydrogenase
Gene product: Alternative nameSDHA
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1GGGGACAACTTTGTATAGAAAAGTTGGTATCATATTCATCATTACATAATTTC
Additional information primer 15’UTRB4F
Sequence Primer 2GGGGACTGCTTTTTTGTACAAACTTGGTGCCACTTTATATTTATTTTTTGATAG
Additional information primer 25’UTRB1R
3'-UTR
Gene Model of Parasite PBANKA_0518200
Gene productflavoprotein subunit of succinate dehydrogenase, putative
Gene product: Alternative nameSDHA
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1GGGGACAGCTTTCTTGTACAAAGTGGATTTATCCTTTTTTTTATTCCC
Additional information primer 13’UTRB2F
Sequence Primer 2GGGGACAACTTTGTATAATAAAGTTGGTGTATAAATCGTAAAGGGGAAT
Additional information primer 23’UTRB3R
Insertion/Replacement locus
Replacement / InsertionInsertion locus
Gene Model of Parasite PBANKA_0518200
Gene productflavoprotein subunit of succinate dehydrogenase, putative
Gene product: Alternative nameSDHA
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4