RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-748
Malaria parasiteP. berghei
Genotype
Transgene
Transgene not Plasmodium: Flp recombinase of yeast (Flp)
Promoter: Gene model: PBANKA_0501200; Gene model (P.falciparum): Not available; Gene product: early transcribed membrane protein up-regulated in infective sporozoites
3'UTR: Gene model: PBANKA_1349800; Gene product: sporozoite surface protein 2 thrombospondin-related anonymous protein (sporozoite surface protein 2; SSP2; SSP-2)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Phenotype Sporozoite;
Last modified: 14 July 2012, 19:35
  *RMgm-748
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 22450301
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherD. Panchal; P. Bhanot
Name Group/DepartmentDepartment of Microbiology and Molecular Genetics, University of Medicine and Dentistry of New Jerse
Name InstituteNew Jersey Medical School
CityNew Jersey
CountryUSA
Name of the mutant parasite
RMgm numberRMgm-748
Principal namePbA Flp@UIS4
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteSalivary gland sporozoites express Flp
Liver stageNot different from wild type
Additional remarks phenotype

Mutant/mutation
The mutant expresses the yeast Flp recombinase under the control of the promoter of uis4. The flp gene is integrated into the silent 230p locus by double cross-over integration.
The mutant does not contain a selectable marker. This marker (the hdhfr gene) has been removed from the genome by using the Flp/FRT site-specific recombination (SSR) system (see below 'Protein-function'). Removal of the hdhfr gene has been achieved by  transmission of the mutant through mosquitoes, thereby activating expression of the Flp recombinase that resulted in the excision of the hdhfr gene which was flanked by FRT sequences.

Protein (function)
In the Flp/FRT site-specific recombination (SSR) system of yeast, the Flp recombinase recognizes the 34 bp FRT sites and excises any DNA located between two directly oriented sites (referred to as the FRTed sequence). The activity of FlpL (Low activity) recombinase is greatly reduced at 37°C and above - temperatures in erythrocytic stages in the vertebrate host - and is maintained at 20°C –25°C, temperatures permissive for parasite development in the mosquito.

Phenotype
Expression of Flp is specific for salivary gland sporozoites. Expression of Flp does not affect viability of infectivity of the different life cycle stages.

Additional information
This mutant expressing Flp can be used for introducing additional DNA sequences (genes) that are flanked by FRT sequences. Subsequently these sequences can be removed by mosquito transmission. This 'conditional mutagenesis' approach allows for the analysis of the effect of removal of genes essential for blood stage development.

Different Flp-expressing P. berghei lines have been generated that can be used as parasite receiver lines for conditional mutation/disruption of genes of interest. Several of these lines express also GFP (under the control of a constitutive promoter). Several lines have been generated in the P. berghei NK65 background. A disadvantage of several lines is that the flp gene is integrated by single cross-over recombination (insertion construct). The disadvantage of using an insertion construct is that the construct can be removed from the genome, thereby restoring the wild type genotype. in addition, some of these mutante contain the pbdhfr selectable marker. Therefore, introduction of additional mutations is dependent on a second drug selectable marker (hdhfr).

The line described here is made in P. berghei ANKA and the flp gene is integrated into the silent 230p locus by double cross-over integration.

See also mutant PbA FlpL@TRAP (RMgm-747) for a mutant expressing FlpL under the control of the trap promoter that is switched on in midgut and salivary gland sporozoites. The line is also made in P. berghei ANKA and the flpl gene is integrated into the silent 230p locus by double cross-over integration.

Other mutants
RMgm-268: A A P. berghei NK65 mutant expressing FlpL under the control of the promoter of trap. It does not contain a drug-selectable marker.
RMgm-269: A P. berghei NK65 mutant expressing Flp under the control of the uis4 promoter that is specifically switched on in sporozoites after salivary gland invasion. In addition it expresses GFP under the control of the constitutive hsp70 promoter.
RMgm-278: A P. berghei NK65 mutant expressing Flp under the control of the uis4 promoter that is specifically switched on in sporozoites after salivary gland invasion. It does not contain a drug-selectable marker and does not express GFP.
RMgm-683: A P. berghei NK65 mutant expressing FlpL under the control of the trap promoter. It does not contain a drug-selectable marker. In addition it expresses GFP under the control of the hsp70 promoter. The gfp gene is stably integrated into the genome.
RMgm-747: A P. berghei ANKA mutant expressing FlpL under the control of the trap promoter that is switched on in midgut and salivary gland sporozoites. The line is  made in P. berghei ANKA and the flpl gene is integrated into the silent 230p locus by double cross-over integration. The mutant does not express GFP.


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameFlp recombinase of yeast (Flp)
Details of the genetic modification
Inducable system usedFlp/FRT
Additional remarks inducable system The mutant expresses the yeast Flp recombinase under the control of the promoter of uis4. The mutant does not contain a selectable marker. This marker (the hdhfr gene) has been removed from the genome by using the Flp/FRT site-specific recombination (SSR) system. Removal of the hdhfr gene has been achieved by transmission of the mutant through mosquitoes, thereby activating expression of the Flp recombinase that resulted in the excision of the hdhfr gene that was flanked by FRT sequences.
Type of plasmid/constructPlasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationThe Flp coding sequence was flanked by 1.5 kb of 5' uis4 regulatory sequence and 0.6 kb 3′ trap regulatory sequence and associated with a FRTed hdhfr selectable marker containing its own (eef1a) promoter and terminator sequences.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0501200
Gene Model P. falciparum ortholog Not available
Gene productearly transcribed membrane protein up-regulated in infective sporozoites
Gene product: Alternative name
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_1349800
Gene productsporozoite surface protein 2 thrombospondin-related anonymous protein
Gene product: Alternative namesporozoite surface protein 2; SSP2; SSP-2
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1ATGGTACCATGA-CATCATTTATAAATCATG
Additional information primer 1P1 (KpnI); 230p targeting region
Sequence Primer 2ATACTGCAGTGTGTTTTATTTGGATGTGC
Additional information primer 2P2 (PstI); 230p targeting region
Sequence Primer 3TTGGGCCCTTCTCTTGAGCCCGTTAAT
Additional information primer 3P3 (ApaI); 230p targeting region
Sequence Primer 4TTGGGCCCTAGGAAATTTGTTTATTTTTATA
Additional information primer 4P4 (ApaI); 230p targeting region