RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-5274
Malaria parasiteP. yoelii
Genotype
TaggedGene model (rodent): PY17X_1465200; Gene model (P.falciparum): PF3D7_1249700; Gene product: conserved Plasmodium protein, unknown function (LINUP, liver stage nuclear protein)
Name tag: mCherry
Phenotype Liver stage;
Last modified: 30 December 2022, 14:08
  *RMgm-5274
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging
Reference (PubMed-PMID number) Not published (yet)
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. yoelii
Parent strain/lineP. y. yoelii 17X
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherGoswami D, Vaughan AM
Name Group/DepartmentCenter for Global Infectious Disease Research
Name InstituteSeattle Children’s Research Institute
CitySeattle
CountryUSA
Name of the mutant parasite
RMgm numberRMgm-5274
Principal namePy LINUP(mCherry)
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageLINUPmCherry expression was only seen during mid-to-late liver stage development, which in Py has an approximate 50-hour duration. LINUPmCherry expression was not detected at 24 hours of liver stage development but was detected at both 36 and 48 hours the latter a timepoint when merozoites form during the final stages of exo-erythrocytic schizogony. LINUPmCherry localized to live stage nuclei together with parasite DNA and partially co-localized with the histone marker, histone 3 acetylated lysine 9 (H3K9) which marks areas of active gene expression.
Additional remarks phenotype

Mutant/mutation
The mutant expresses a C-terminal mCherry-tagged version of LINUP (liver stage nuclear protein)

Published in: bioRxiv preprint doi: https://doi.org/10.1101/2022.12.13.519845

Protein (function) 

PY17X_1465200, is a single exon gene encoding a 746 amino acid protein and is conserved among Plasmodium species. The overall amino acid identity between the P. yoelii, P. falciparum and P. vivax syntenic orthologs was 40%, whilst amino acid similarity was 60%. Identity in a 122 amino acid stretch near to the N-terminus (amino acids 44-161) was 89%. In addition, comprehensive protein BLAST searches revealed that the gene has no orthologs in other Apicomplexa or any other eukaryote and is thus unique to Plasmodium. PY17X_1465200 contains a conserved N-terminal 24 amino acid nuclear localization sequence (NLS) in Py, Pf and Pv that was nearly identical in amino acid sequence among the three species.

Phenotype
Phenotype analyses of a mutant lacking expression of LINUP (RMgm-5272) showed severe liver stage attenuation (with a late liver stage growth arrest phenotype; although not complete)

Analysis of the mutant expressing a C-terminal mCherry-tagged version of LINUP showed the following: LINUPmCherry expression was only seen during mid-to-late liver stage development, which in Py has an approximate 50-hour duration. LINUPmCherry expression was not detected at 24 hours of liver stage development but was detected at both 36 and 48 hours the latter a timepoint when merozoites form during the final stages of exo-erythrocytic schizogony. LINUPmCherry localized to live stage nuclei together with parasite DNA and partially co-localized with the histone marker, histone 3 acetylated lysine 9 (H3K9) which marks areas of active gene expression.

Additional information

Other mutants


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PY17X_1465200
Gene Model P. falciparum ortholog PF3D7_1249700
Gene productconserved Plasmodium protein, unknown function
Gene product: Alternative nameLINUP, liver stage nuclear protein
Details of the genetic modification
Name of the tagmCherry
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationCreation of Py LINUP(mCherry) utilized double crossover homologous recombination using modified plasmid pL0005 (obtained through the MR4 as part of the BEI Resources Repository, NIAID, NIH: Plasmodium berghei pL0005, MRA-774), which allowed for the addition of a mCherry epitope tag to the carboxy terminus of LINUP.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6