RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-5124
Malaria parasiteP. berghei
Genotype
DisruptedGene model (rodent): PBANKA_0938300; Gene model (P.falciparum): PF3D7_1108700; Gene product: heat shock protein J2 (HspJ62; heat shock protein 40, type II)
Phenotype Asexual bloodstage; Gametocyte/Gamete; Oocyst;
Last modified: 13 December 2021, 11:16
  *RMgm-5124
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene disruption
Reference (PubMed-PMID number) Reference 1 (PMID number) : 34880324
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherKashif M, Singh AP
Name Group/DepartmentInfectious Diseases Laboratory, National Institute of Immunology
Name InstituteAruna Asaf Ali Marg
CityNew Delhi
CountryIndia
Name of the mutant parasite
RMgm numberRMgm-5124
Principal nameΔHspJ62
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNormal growth and morphology. evidence is presented for a higher growth rate.
Gametocyte/GameteEvidence is presented for the lack of gametocyte production and absence of male gamete production (by exflagellation)
Fertilization and ookineteNot tested
OocystNo oocyst formation.
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant lacks expression of HSPJ62 and expresses GFP (see also mutant RMgm-2668 for unsuccessful attempts to select mutants with a disrupted hspj62 gene).

Protein (function)
Te crucial mediators of the heat shock response during elevated temperatures in the host are heat shock proteins (HSPs) that display stress-induced expression. As molecular chaperones, these proteins promote the folding of cellular proteins and prevent their aggregation10. Approximately 2% of the Plasmodium genome codes for molecular chaperones. Chaperones are a family of proteins responsible for proper folding of translated peptide chains into their monomeric or oligomeric forms during stress. Based on their molecular weight, HSPs are categorized into eight main families: HSP110, HSP100, HSP90, HSP70, HSP60, HSP40, HSP10, and  small HSPs (sHSPs). Comparison with other organisms shows that more than 50% of HSP proteins (~43) in the Plasmodium parasite belong to the HSP40 family. Based on their conserved domains, the HSP40 protein family is divided into four distinct classes: Type I HSP40 proteins contain an N-terminal J-domain, zinc-binding  cysteine rich domain, substrate-binding C-terminal, histidine-proline-aspartate (HPD) motif, and glycine/phenylalanine (GP) rich region. Te GP region separates the N-terminal J domain from the rest of the protein. Type II proteins do not have zinc-binding domains, while only DNAJ domains are present in type III and IV HSP40 proteins; however, type IV protein sequences exhibit disparities in the HPD motif. Generally, HSP families are conserved in Plasmodium species, while comparative data analysis of the molecular chaperone families shows that there are some members that are specifc to stage, lineage or species of Plasmodium. RESA is a type IV Hsp40-like protein that is expressed in parasites during early development of the merozoite stage and interacts with the membrane of invaded erythrocytes to prevent further invasion. Out of 43 Hsp40 proteins, 19 proteins show homology with their orthologues from other species of Apicomplexan, indicating that these proteins could have specifc functions in the parasite and could be promising drug targets, while variance was observed in most of the exported proteins 

Phenotype
Normal growth and morphology. evidence is presented for a higher growth rate. Evidence is presented for the lack of gametocyte production and absence of male gamete production (by exflagellation). No oocyst formation.

Additional information
See also mutant RMgm-2668 for unsuccessful attempts to select mutants with a disrupted hspj62 gene).

Other mutants


  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_0938300
Gene Model P. falciparum ortholog PF3D7_1108700
Gene productheat shock protein J2
Gene product: Alternative nameHspJ62; heat shock protein 40, type II
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct used(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Partial or complete disruption of the geneComplete
Additional remarks partial/complete disruption
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markerunknown
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationTe HspJ62 gene was replaced by a targeting construct cloned into a plasmid (pBC-GFP-hDHFR) using double homologous recombination. Te targeting construct consisted of a reporter marker GFP and an hDHFR expression cassette (pyrimethamine resistance) placed between the 702 bp 5′UTR and 817 bp 3′UTR of the PbHspJ62 gene (PBANKA_0938300) to form homologous gene sequences on either side of the cassette. Te 5′UTR was cloned between the XhoI and SalI sites, while the 3′UTR was cloned between restriction sites NotI and SacI (primer details given in Supplementary Table 1). For this, the 5′UTR was amplifed using genomic DNA of P. berghei. The digested amplicon was ligated between the XhoI and SalI sites of the plasmid. Te plasmid was transformed into E. coli, and the positive clone was confrmed by restriction digestion and sequencing. Afer confrming the 5′UTR, the 3′UTR was also cloned similarly between NotI and SacI sites. Te fnal construct was confrmed by double digestion and sequencing.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6