SummaryRMgm-5099
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Successful modification | The parasite was generated by the genetic modification |
The mutant contains the following genetic modification(s) | Gene mutation, Introduction of a transgene |
Reference (PubMed-PMID number) |
Reference 1 (PMID number) : 34628068 |
MR4 number | |
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Parent parasite used to introduce the genetic modification | |
Rodent Malaria Parasite | P. yoelii |
Parent strain/line | P. yoelii 17XL |
Name parent line/clone | RMgm-5083 |
Other information parent line | The mutant contains a diCre expression cassette containing the two genes Cre59-FKBP and Cre60-FRB placed on either side of the bidirectional eef1a promoter. This expression cassette has been introduced in the neutral p230p locus of wild type P. yoelii. This mutant does not contain a drug-selectable marker (SM). The hdhfr-yfcu SM, used to introduce the diCre cassette, has been removed by negative selection. |
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The mutant parasite was generated by | |
Name PI/Researcher | Chaiyawong N, Kaneko O |
Name Group/Department | Graduate school of Biomedical Sciences |
Name Institute | Nagasaki University |
City | Nagasaki |
Country | Japan |
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Name of the mutant parasite | |
RMgm number | RMgm-5099 |
Principal name | PyAPH-iKO cl1, cl2 |
Alternative name | |
Standardized name | |
Is the mutant parasite cloned after genetic modification | Yes |
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Phenotype | |
Asexual blood stage | From the abstract: 'We found that APH deletion' (i.e. knockdown after RAP treatment) resulted in a reduction in parasite asexual growth and erythrocyte invasion, with some parasites retaining the ability to invade and grow without APH. APH deletion impaired the secretion of microneme proteins, MTRAP and AMA1, and upon contact with erythrocytes the secretion of MTRAP, but not AMA1, was observed.' |
Gametocyte/Gamete | Not tested |
Fertilization and ookinete | Not tested |
Oocyst | Not tested |
Sporozoite | Not tested |
Liver stage | Not tested |
Additional remarks phenotype | Mutant/mutation In addition, the mutant contains a diCre expression cassette containing the two genes Cre59-FKBP and Cre60-FRB placed on either side of the bidirectional eef1a promoter (see the parent line RMgm-5083 for details about this transgene expression cassette). Protein (function) According to a model largely generated by characterization of T. gondii MIC2 (a homolog of Plasmodium TRAP proteins) and AMA1, diacylglycerol is produced during a signaling cascade involving phospholipase C. The diacylglycerol is further converted to phosphatidic acid (PA) by a diacylglycerol kinase on the inner leaflet of the plasma membrane, which is then recognized by acylated pleckstrin homology (pH) domain-containing protein (APH) on the cytosolic face of the microneme membrane. The binding of APH to PA facilitates juxtaposition of these two membranes, to release the contents of micronemes. Additional information |
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Details of the target gene | |||||||||||||||||||||||||||
Gene Model of Rodent Parasite | PY17X_0716800 | ||||||||||||||||||||||||||
Gene Model P. falciparum ortholog | PF3D7_0414600 | ||||||||||||||||||||||||||
Gene product | acylated pleckstrin-homology domain-containing protein, putative | ||||||||||||||||||||||||||
Gene product: Alternative name | APH | ||||||||||||||||||||||||||
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Details of the genetic modification | |||||||||||||||||||||||||||
Short description of the mutation | loxP sequences inserted in intron 1 and in the 3'UTR | ||||||||||||||||||||||||||
Inducable system used | No | ||||||||||||||||||||||||||
Short description of the conditional mutagenesis | Not available | ||||||||||||||||||||||||||
Additional remarks inducable system | |||||||||||||||||||||||||||
Type of plasmid/construct | CRISPR/Cas9 construct: integration through double strand break repair | ||||||||||||||||||||||||||
PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||||||||||
Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||||||||||
Plasmid/construct map | |||||||||||||||||||||||||||
Plasmid/construct sequence | |||||||||||||||||||||||||||
Restriction sites to linearize plasmid | |||||||||||||||||||||||||||
Selectable marker used to select the mutant parasite | hdhfr/yfcu | ||||||||||||||||||||||||||
Promoter of the selectable marker | eef1a | ||||||||||||||||||||||||||
Selection (positive) procedure | pyrimethamine | ||||||||||||||||||||||||||
Selection (negative) procedure | No | ||||||||||||||||||||||||||
Additional remarks genetic modification | Generation of plasmids: To construct the pDC2-Cas9-PyU6-PyAPH-3’loxP-hDHFR/yFCU plasmid, the pDC2-cam-Cas9-PyU6-hDHFR plasmid was digested with BbsI and ligated with DNA fragment containing a gRNA1 component targeting the P. yoelii aph gene locus (PY17X_0716800). The aph gene locus was amplified from P. yoelii 17XL genomic DNA (gDNA) with primers P18 and P19 using an In-Fusion HD cloning kit (Takara Bio Inc., Shiga, Japan). Then, a DNA fragment containing a sequence encoding the 5′ homologous region (HR1) of the aph gene locus followed by Myc epitopes and a DNA fragment containing a loxP sequence and 3’ HR (HR2) of the aph gene locus were PCR-amplified from P. yoelii 17XL gDNA using primers P20 and P21 or P24 and P25, respectively, then ligated using the In-fusion method with the above plasmid digested with HpaI and AatII. The generated plasmid was digested with NotI and ligated using the In-Fusion method ith a DNA fragment containing an hDHFR/yFCU expression cassette amplified from the pDC2-Cas9-PyU6-PypPK1-Myc [24] plasmid with P22 and P23. Parasite gDNA was extracted using a QIAamp DNA blood mini kit (Qiagen, Hilden, Germany). To construct the pDC2-Cas9-PyU6-PyAPH-5’loxPi plasmid, pDC2-cam-Cas9-PyU6-hDHFR plasmid was digested with BbsI and ligated with a DNA fragment containing the gRNA2 component targeting the aph gene locus and amplified from P. yoelii 17XL gDNA with primers P26 and P27 using an In-Fusion HD cloning kit. Then, HR3 and HR4 were amplified from parasite gDNA with primers P28 and P29 or P30 and P31, respectively. LoxP-intron sequence (103 bp) and a NotI site were added to primers P30 and P31, respectively, for HR4 [25]. The gRNA2-inserted plasmid was digested with HpaI and AatII and the HR3 and HR4 fragments were inserted using the In-Fusion method. The resulting plasmid was digested with NotI and a DNA fragment containing hDHFR/ yFCU expression cassette amplified with P32 and P33 was then inserted as described. To construct the pDC2-Cas9-PyU6-PyMTRAP-Ty plasmid, the pDC2-cam-Cas9-PyU6-hDHFR plasmid was digested with BbsI and ligated with a DNA fragment containing the gRNA3 component targeting the mtrap gene locus. The mtrap gene locus was amplified from P. yoelii 17XL gDNA with primers P34 and P35 using an In-Fusion HD cloning kit. Then, the HR5 with a sequence coding for a Ty epitope and HR6 were amplified from parasite gDNA with primers P36 and P37 or P40 and P41, respectively. The gRNA3-inserted plasmid was digested with HpaI and AatII and these two DNA fragments were inserted using the In-Fusion method. A DNA fragment containing an hDHFR/yFCU expression cassette was amplified with P38 and P39 and ligated with the above NotI-digested plasmid. All primers used to generate plasmids are shown in the supplemental Table S1. The plasmids for transfection were prepared using a HiSpeed Plasmid Midi Kit (Qiagen, Hilden, Germany). Generation of transgenic parasite lines: Firstly, the 3′ side of the aph gene locus of a P. yoelii 17XL-based parasite cloned line expressing DiCre recombinase [23] was modified using the CRISPR/Cas9 genome editing method using the plasmid pDC2-Cas9-PyU6-PyAPH-3’loxP-hDHFR/yFCU to yield two APH-3’loxP pre-5FC parasite lines. To remove the hDHFR/yFCU expression cassette from the parasite genome, negative selection was done by oral administration of 5-fluorocytosine (5FC; Sigma-Aldrich, St. Louis, Missouri, USA) via drinking water (1 mg/mL) to yield 2 APH-3’loxP parasite lines [26]. After cloning, the 5′ side of the aph gene locus of two APH-3’loxP cloned parasite lines was further modified using a plasmid pDC2-Cas9-PyU6-PyAPH-5’loxPi, the hDHFR/yFCU expression cassette was removed as above, and then cloning was performed to yield PyAPH-iKO clones #1 and #2. PyAPH-iKO clone #1 was further modified to tag its PyMTRAP with a Ty epitope using the plasmid pDC2-Cas9-PyU6-PyMTRAP- Ty. | ||||||||||||||||||||||||||
Additional remarks selection procedure | |||||||||||||||||||||||||||
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Type and details of transgene | |||||||||||||||||||
Is the transgene Plasmodium derived | Transgene: not Plasmodium | ||||||||||||||||||
Transgene name | diCre (Cre59-FKBP and Cre60-FRB) | ||||||||||||||||||
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Details of the genetic modification | |||||||||||||||||||
Inducable system used | No | ||||||||||||||||||
Additional remarks inducable system | |||||||||||||||||||
Type of plasmid/construct | CRISPR/Cas9 construct: integration through double strand break repair | ||||||||||||||||||
PlasmoGEM (Sanger) construct/vector used | No | ||||||||||||||||||
Modified PlasmoGEM construct/vector used | No | ||||||||||||||||||
Plasmid/construct map | |||||||||||||||||||
Plasmid/construct sequence | |||||||||||||||||||
Restriction sites to linearize plasmid | |||||||||||||||||||
Selectable marker used to select the mutant parasite | hdhfr/yfcu | ||||||||||||||||||
Promoter of the selectable marker | eef1a | ||||||||||||||||||
Selection (positive) procedure | pyrimethamine | ||||||||||||||||||
Selection (negative) procedure | 5-fluorocytosine (5-FC) | ||||||||||||||||||
Additional remarks genetic modification | The plasmid pBS_DC_hsp86/Bip5’ was a kind gift from M. Blackman. The promoter to drive FRB-Cre60 and FKBP-Cre59 was replaced with the P. yoelii elongation factor 1 alpha (ef-1α) bi-directional promoter (pBS-DC-Pyef-1α). The DiCre expression cassette was PCR-amplified from pBS-DC-Pyef-1α using oligonucleotide primers DiCre.F and DiCre.R, and ligated into the pDC2-cam-Cas9-PyU6-hDHFR plasmid using an In-Fusion HD cloning kit (Takara Bio Inc., Shiga, Japan), yielding pDC2-Cas9-DC-Pyef-1α. A guide RNA (gRNA) sequence to introduce a double strand break in the p230p locus (PY17X_0306600) was designed using EupaGDT and ligated using T4 ligase (New England Biolabs, Ipswich, MA, USA). The 5’- and 3’- homologous regions (HRs) were PCR-amplified from parasite gDNA with oligonucleotide primers Pyp230p 5HR.F, Pyp230p-5HR.R, Pyp230p-3HR.F, and Pyp230p-3HR.R; and inserted into pDC2-Cas9-DC-Pyef-1α, yielding pDC2-Cas9-p230p-DC-Pyef-1α To generate DiCre-expressing P. yoelii, a DNA fragment containing a DiCre expression cassette and a hDHFR-yFCU expression cassette was integrated into the Pyp230p gene locus, which is dispensable in all development stages. After validating the insertion of this DNA fragment into the target genome locus by genotype PCR, parasites were treated with 5-FC to remove the hDHFR-yFCU expression cassette, then cloned by limiting dilution | ||||||||||||||||||
Additional remarks selection procedure | |||||||||||||||||||
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Other details transgene | |||||||||||||||||||
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Promoter | |||||||||||||||||||
Gene Model of Parasite | PY17X_1134800 | ||||||||||||||||||
Gene Model P. falciparum ortholog | PF3D7_1357000 | ||||||||||||||||||
Gene product | elongation factor 1-alpha | ||||||||||||||||||
Gene product: Alternative name | eef1a | ||||||||||||||||||
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3'-UTR | |||||||||||||||||||
Gene Model of Parasite | Not available | ||||||||||||||||||
Gene product | Not available | ||||||||||||||||||
Gene product: Alternative name | |||||||||||||||||||
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Insertion/Replacement locus | |||||||||||||||||||
Replacement / Insertion | Replacement locus | ||||||||||||||||||
Gene Model of Parasite | PY17X_0306600 | ||||||||||||||||||
Gene product | 6-cysteine protein | ||||||||||||||||||
Gene product: Alternative name | P230p; 230p | ||||||||||||||||||
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