RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-5053
Malaria parasiteP. yoelii
Genotype
TaggedGene model (rodent): PY17X_1040200; Gene model (P.falciparum): PF3D7_1404300; Gene product: secreted ookinete adhesive protein, putative (SOAP)
Name tag: 2A-mCherry
Phenotype Fertilization and ookinete; Oocyst;
Last modified: 29 July 2021, 14:33
  *RMgm-5053
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging
Reference (PubMed-PMID number) Reference 1 (PMID number) : 34301597
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. yoelii
Parent strain/lineP. y. yoelii 17XNL
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherYang Z, Yuan J
Name Group/DepartmentState Key Laboratory of Cellular Stress Biology, Innovation Center for Cell Signal Network, School o
Name InstituteXiamen University
CityXiamen, Fujian
CountryChina
Name of the mutant parasite
RMgm numberRMgm-5053
Principal namesoap-2a-mCherry
Alternative nameOmCherry
Standardized name
Is the mutant parasite cloned after genetic modificationNo
Phenotype
Asexual blood stageNot tested
Gametocyte/GameteNot different from wild type
Fertilization and ookineteSince the soap gene is highly expressed in mature ookinetes and early oocysts, we engineered two parasite strains Ogfp and OmCherry, wherein the endogenous soap sequence is fused with the coding sequence of green fluorescent protein (GFP) and mCherry, respectively, at the C terminus to track early oocysts. A “ribosome skip” T2A peptide was inserted between the SOAP and GFP or mCherry to ensure the separate expression of GFP or mCherry and the endogenous SOAP. As expected, GFP and mCherry fluorescence was detected specifically in the mature ookinetes in vitro and in the ookinetes and early oocysts in vivo
OocystSince the soap gene is highly expressed in mature ookinetes and early oocysts, we engineered two parasite strains Ogfp and OmCherry, wherein the endogenous soap sequence is fused with the coding sequence of green fluorescent protein (GFP) and mCherry, respectively, at the C terminus to track early oocysts. A “ribosome skip” T2A peptide was inserted between the SOAP and GFP or mCherry to ensure the separate expression of GFP or mCherry and the endogenous SOAP. As expected, GFP and mCherry fluorescence was detected specifically in the mature ookinetes in vitro and in the ookinetes and early oocysts in vivo
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses a C-terminal 2A-GFP-tagged form of SOAP.
Since the soap gene is highly expressed in mature ookinetes and early oocysts, we engineered two parasite strains Ogfp and OmCherry, wherein the endogenous soap sequence is fused with the coding sequence of green fluorescent protein (GFP) and mCherry, respectively, at the C terminus to track early oocysts. A “ribosome skip” T2A peptide was inserted between the SOAP and GFP or mCherry to ensure the separate expression of GFP or mCherry and the endogenous SOAP. As expected, GFP and mCherry fluorescence was detected specifically in the mature ookinetes in vitro and in the ookinetes and early oocysts in vivo 

The mutant has been generated using CRISPR/cas9 genome editing (using constructs as described for mutant RMgm-1095

Protein (function)
SOAP, a 21-kDa protein, has the hallmarks of an extracellular soluble (secreted) protein: it contains a predicted cleavable amino-terminal signal peptide, but lacks other typical organellar targeting or membrane anchoring signals. The conserved protein contains 12, closely spaced, cysteine residues and comparison of SOAP of different Plasmodium species indicates a modular structure of two cysteine-rich domains separated by a spacer sequence of variable amino acid length and composition.
SOAP is located in the micronemes of ookinetes.

Phenotype
Since the soap gene is highly expressed in mature ookinetes and early oocysts, we engineered two parasite strains Ogfp and OmCherry, wherein the endogenous soap sequence is fused with the coding sequence of green fluorescent protein (GFP) and mCherry, respectively, at the C terminus to track early oocysts. A “ribosome skip” T2A peptide was inserted between the SOAP and GFP or mCherry to ensure the separate expression of GFP or mCherry and the endogenous SOAP. As expected, GFP and mCherry fluorescence was detected specifically in the mature ookinetes in vitro and in the ookinetes and early oocysts in vivo

Additional information

Other mutants

 


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PY17X_1040200
Gene Model P. falciparum ortholog PF3D7_1404300
Gene productsecreted ookinete adhesive protein, putative
Gene product: Alternative nameSOAP
Details of the genetic modification
Name of the tag2A-mCherry
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/constructCRISPR/Cas9 construct: integration through double strand break repair
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationCRISPR-Cas9 plasmid pYCm was used for all the parasite genetic modification. To construct vectors for gene editing, we amplified 5′ and 3′ genomic sequence (400 to 500 bp) of target genes as homologous arms using specific primers and inserted the sequences into specific restriction sites in pYCm. Oligonucleotides for single guide RNAs (sgRNAs) were mixed in pairs, denatured at 95°C for 3 min, annealed at room temperature for 5 min, and ligated into pYCm. The sgRNAs were designed to target the coding region of a gene using the online program EuPaGDT. DNA fragments encoding 6HA, 4Myc, 3V5, and GFP or mCherry were inserted between the left and right arms in frame with the gene of interest. For each gene, two sgRNAs were designed to target sites close to the C- or N-terminal part of the coding region. Infected red blood cells (iRBCs) were electroporated with 5 to 10 μg of plasmid DNA using the Lonza Nucleofector . Transfected parasites were immediately intravenously injected into a naïve mouse and were exposed to pyrimethamine (6 mg/ml) 24 hours after transfection.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6