RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-4885
Malaria parasiteP. berghei
Genotype
DisruptedGene model (rodent): PBANKA_1105300; Gene model (P.falciparum): PF3D7_0505700; Gene product: conserved Plasmodium membrane protein, unknown function (akratin)
Transgene
Transgene not Plasmodium: GFP
Promoter: Gene model: PBANKA_0711900; Gene model (P.falciparum): PF3D7_0818900; Gene product: heat shock protein 70 (HSP70)
3'UTR: Gene model: Not available; Gene product: Not available
Replacement locus: Gene model: PBANKA_1105300; Gene product: conserved Plasmodium membrane protein, unknown function (akratin)
Phenotype Asexual bloodstage; Gametocyte/Gamete; Fertilization and ookinete; Oocyst;
Last modified: 28 October 2020, 17:08
  *RMgm-4885
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene disruption, Introduction of a transgene
Reference (PubMed-PMID number) Not published (yet)
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherKehrer J, Frischknecht F
Name Group/DepartmentCenter for Infectious Diseases, Integrative Parasitology
Name InstituteHeidelberg University Medical School
CityHeidelberg
CountryGermany
Name of the mutant parasite
RMgm numberRMgm-4885
Principal nameakratin(-)
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageReduction in blood stage growth from around 10 as observed for wild type parasites to seven for parasites lacking akratin
Gametocyte/GameteA strong reduction in male exflagellation
Fertilization and ookineteReduced gametocyte to ookinete conversion rates
OocystAbsence of oocyst formation
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant lacks expression of akratin and expresses GFP under control of the constitutive hsp70 promoter. The mutant does not contain a drug selectable marker (SM). The SM has been removed by negative selection
Published in bioRxiv preprint doi: https://doi.org/10.1101/2020.09.29.318857.

Protein (function)
PbANKA_1105300 was found to be conserved among Plasmodium spp. It shares 82% identity with its orthologue in P. yoelii, but only 35% and 32% with its orthologues in P. falciparum and P. vivax, respectively. In contrast to P. berghei and P. falciparum, the orthologues in P. yoelii and P. vivax are predicted to contain only two TMDs. Furthermore, the P. falciparum protein contains about 181 two times more amino acids than the P. berghei protein. No orthologue was found outside Plasmodium spp

Phenotype
Reduction in blood stage growth from around 10 as observed for wild type parasites to seven for parasites lacking akratin. A strong reduction in male exflagellation. Reduced gametocyte to ookinete conversion rates. 

Additional information
Evidence is presented that male gamete formation is blocked. Activated males replicate their DNA and flagellar axonemes are formed, albeit non-motile that appered to be trapped within the red blood cells.

Mutation of a C-terminal motif of akratin uncoupled akratin function in gametocytes and ookinetes (see mutant RMgm-4886). In the mutant expressing mutated akratin, ookinetes were formed but no oocysts. Evidence is presented that the mutant ookinetes are defective in midgut-wall traversal.

Other mutants


  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1105300
Gene Model P. falciparum ortholog PF3D7_0505700
Gene productconserved Plasmodium membrane protein, unknown function
Gene product: Alternative nameakratin
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct used(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Partial or complete disruption of the geneComplete
Additional remarks partial/complete disruption
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationakratin(-): The 3`UTR of PbANKA_1105300 was amplified using primers JK67 and JK68 and inserted into a plasmid containing the recyclable yFCU/ hDHFR selection cassette and GFP expressed under the HSP70 promoter digested with NotI and SacII. The 5`UTR of PbANKA_1105300 was amplified using primers JK65 and JK66 and inserted into the plasmid using KPNI and HindIII. The resulting plasmid pL28 was linearized with NotI and SacII prior transfection for double crossover integration
Additional remarks selection procedureThe mutant does not contain a drug selectable marker (SM). The SM has been removed by negative selection
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationakratin(-): The 3`UTR of PbANKA_1105300 was amplified using primers JK67 and JK68 and inserted into a plasmid containing the recyclable yFCU/ hDHFR selection cassette and GFP expressed under the HSP70 promoter digested with NotI and SacII. The 5`UTR of PbANKA_1105300 was amplified using primers JK65 and JK66 and inserted into the plasmid using KPNI and HindIII. The resulting plasmid pL28 was linearized with NotI and SacII prior transfection for double crossover integration
Additional remarks selection procedureThe mutant does not contain a drug selectable marker (SM). The SM has been removed by negative selection
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0711900
Gene Model P. falciparum ortholog PF3D7_0818900
Gene productheat shock protein 70
Gene product: Alternative nameHSP70
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite Not available
Gene productNot available
Gene product: Alternative name
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_1105300
Gene productconserved Plasmodium membrane protein, unknown function
Gene product: Alternative nameakratin
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4