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Details of the target gene |
Gene Model of Rodent Parasite |
PYYM_0017400
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Gene Model P. falciparum ortholog |
Not available
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Gene product | PIR protein |
Gene product: Alternative name | YIR |
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Details of the genetic modification |
Name of the tag | GFP |
Details of tagging | C-terminal |
Additional remarks: tagging | |
Commercial source of tag-antibodies | |
Type of plasmid/construct | (Linear) plasmid single cross-over |
PlasmoGEM (Sanger) construct/vector used | No |
Modified PlasmoGEM construct/vector used | No
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Plasmid/construct map |
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Plasmid/construct sequence |
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Restriction sites to linearize plasmid |
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Selectable marker used to select the mutant parasite | tgdhfr |
Promoter of the selectable marker | eef1a |
Selection (positive) procedure | pyrimethamine |
Selection (negative) procedure | No |
Additional remarks genetic modification | P. yoelii knock-in construct was generated by modifying the existing ePL plasmid which was published previously for use in P. yoelii episomal transfection to create an integration plasmid T2A-ePL. DNA corresponding to the last 500 base-pair of PYYM_0017400 gene was generated by chemical gene synthesis (Genscript). We replaced the portion of the ePL which contains (eGFP tag, P. berghei EF1 constitutive promoter, the 3′ UTR region of P. berghei DHFR/TS gene and the selectable marker T. gondii DHFR gene) with an eGFP-T2A-TgDHFR construct. The T2A-ePL vector was linearized with EcoRV and oncentrated with ethanol precipitation prior to transfection.
The ID of PYYM_0017400 in the P. yoelii 17X annotation is PY17X_1100077. |
Additional remarks selection procedure | |
Primer information: Primers used for amplification of the target sequences
Primer information: Primers used for amplification of the target sequences
Sequence Primer 1 | |
Additional information primer 1 | |
Sequence Primer 2 | |
Additional information primer 2 | |
Sequence Primer 3 | |
Additional information primer 3 | |
Sequence Primer 4 | |
Additional information primer 4 | |
Sequence Primer 5 | |
Additional information primer 5 | |
Sequence Primer 6 | |
Additional information primer 6 | |
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