RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-4854
Malaria parasiteP. yoelii
Genotype
TaggedGene model (rodent): PYYM_0017400; Gene model (P.falciparum): Not available; Gene product: PIR protein (YIR)
Name tag: GFP
Phenotype Asexual bloodstage;
Last modified: 25 August 2020, 12:14
  *RMgm-4854
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging
Reference (PubMed-PMID number) Reference 1 (PMID number) : 32620892
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. yoelii
Parent strain/lineP. y. yoelii YM
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherOmelianczyk RI, Preiser PR
Name Group/DepartmentInfectious Disease Interdisciplinary Research Group
Name InstituteSingapore-MIT Alliance for Research and Technology
CitySingapore
CountrySingapore
Name of the mutant parasite
RMgm numberRMgm-4854
Principal namePYYM_0017400.GFP
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageLive fluorescent microscopy indicated that in trophozoite-stage parasites PYYM_0017400.GFP is located in the PVM as well as in punctate dots in the host cell cytoplasm while in late schizonts the protein is surrounding individual merozoites. All the transfected parasites express the GFP tagged YIR.
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
OocystNot tested
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses a C-terminal GFP-tagged T PYYM_0017400 (in the P. yoelii 17X annotation this gene is PY17X_1100077).

Protein (function)
The ID of PIR gene PYYM_0017400 in the P. yoelii 17X annotation is PY17X_1100077.
The protein is a member of a variant antigen family (Plasmodium interspersed repeat proteins, PIR). These proteins are potentially implicated in host immune system interactions and targeted to or on the surface of the host erythrocyte. In P. vivax there are approximately 350 pir (vir) in the genome, and homologues have been identified in Plasmodium infecting rodents and monkeys; P. berghei (bir), P. chabaudi (cir), P. yoelii (yir), P. knowlesi (kir). PIR proteins show homology to proteins which are members of the RIF/STEVOR family of P. falciparum proteins. Consistent with a role in antigenic variation and immune evasion, PIR proteins have been demonstrated on, or close to the surface membrane of erythrocytes infected with P. vivax, P. chabaudi, P. yoelii and P.berghei  and switching of yir transcription has been observed in response to a host immune response.

Phenotype
From the paper: ' We tagged the PLASMED export signal motif containing YIR (PYYM_0017400) with GFP. 
The correct expression and complete ribosomal cleavage of the PYYM_0017400.GFP fusion protein was established using Western blot analysis of saponin lysed trophozoites. A 63 kDa band corresponding to the full-length PYYM_0017400.GFP fusion protein was detected in both the supernatant and the pellet, indicating that the protein was exported into the host cell cytoplasm (HCC). Live fluorescent microscopy indicated that in trophozoite-stage parasites PYYM_0017400.GFP is located in the PVM as well as in punctate dots in the HCC while in late schizonts the protein is surrounding individual merozoites. All the transfected parasites express the GFP tagged YIR.'

Additional information


Other mutants


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PYYM_0017400
Gene Model P. falciparum ortholog Not available
Gene productPIR protein
Gene product: Alternative nameYIR
Details of the genetic modification
Name of the tagGFP
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/construct(Linear) plasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitetgdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modificationP. yoelii knock-in construct was generated by modifying the existing ePL plasmid which was published previously for use in P. yoelii episomal transfection to create an integration plasmid T2A-ePL. DNA corresponding to the last 500 base-pair of PYYM_0017400 gene was generated by chemical gene synthesis (Genscript). We replaced the portion of the ePL which contains (eGFP tag, P. berghei EF1 constitutive promoter, the 3′ UTR region of P. berghei DHFR/TS gene and the selectable marker T. gondii DHFR gene) with an eGFP-T2A-TgDHFR construct. The T2A-ePL vector was linearized with EcoRV and oncentrated with ethanol precipitation prior to transfection.
The ID of PYYM_0017400 in the P. yoelii 17X annotation is PY17X_1100077.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6