RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-4701
Malaria parasiteP. berghei
Genotype
Transgene
Transgene Plasmodium: Gene model: PF3D7_1335900; Gene model (P.falciparum): PF3D7_1335900; Gene product: thrombospondin-related anonymous protein | sporozoite surface protein 2 (TRAP; SSP2)
Promoter: Gene model: PBANKA_0501200; Gene model (P.falciparum): Not available; Gene product: early transcribed membrane protein up-regulated in infective sporozoites (ETRAMP10.3; UIS4)
3'UTR: Gene model: PBANKA_0501200; Gene product: early transcribed membrane protein up-regulated in infective sporozoites (ETRAMP10.3)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Transgene
Transgene not Plasmodium: GFP-Luciferase
Promoter: Gene model: PBANKA_1133300; Gene model (P.falciparum): PF3D7_1357100; Gene product: elongation factor 1-alpha (eef1a)
3'UTR: Gene model: PBANKA_0719300; Gene product: bifunctional dihydrofolate reductase-thymidylate synthase, putative (dhfr/ts)
Replacement locus: Gene model: PBANKA_0306000; Gene product: 6-cysteine protein (230p)
Transgene
Transgene Plasmodium: Gene model: PF3D7_0202100; Gene model (P.falciparum): PF3D7_0202100; Gene product: liver stage associated protein 2 | Plasmodium exported protein (PHISTc), unknown function (LSAP2)
Promoter: Gene model: PBANKA_0501200; Gene model (P.falciparum): Not available; Gene product: early transcribed membrane protein up-regulated in infective sporozoites (ETRAMP10.3; UIS4)
3'UTR: Gene model: PBANKA_0501200; Gene product: early transcribed membrane protein up-regulated in infective sporozoites (ETRAMP10.3; UIS4)
Replacement locus: Gene model: PBANKA_1206800; Gene product: zinc finger (CCCH type) protein, putative (S1)
Phenotype Sporozoite; Liver stage;
Last modified: 15 January 2020, 13:29
  *RMgm-4701
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Introduction of a transgene, Introduction of a transgene, Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 31740525
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone 2353cl2
Other information parent line2353cl2; see RMgm-4067. This mutant expresses P. falciparum TRAP under control of the uis4 promoter and GFP-luciferase. Both expression cassettes are introduced into the silent 230p locus. In addition this line is a GIMO line since it contains the positive/negative selectable marker cassette (yfcu/hdhfr) in the silent s1 locus (to be able to introduce additional transgenes in the s1 locus)
The mutant parasite was generated by
Name PI/ResearcherHalbroth BR, Salman AM, Hill AV, Spencer A, Janse CJ
Name Group/DepartmentThe Jenner Institute
Name InstituteUniversity of Oxford
CityOxford
CountryUK
Name of the mutant parasite
RMgm numberRMgm-4701
Principal name2398cl4
Alternative namePfLTRAP@PbUIS4 + PfLSAP2@UIS4
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteTransgene expression (TRAP and LSAP2) in sporozoites
Liver stageSee additional remarks phenotype
Additional remarks phenotype

Mutant/mutation
The mutant expresses both P. falciparum TRAP and LSAP2 under control of the sporozoite/liver stage promoter uis4 and expresses the reporter fusion protein GFP-Luciferase under control of the constitutive eef1a promoter

Both the TRAP and LSAP2 expression cassettes has been introduced into the genome by the GIMO transfection method ('gene insertion/marker out'). The trap gene has been introduced into the silent 230p locus and the lsap2 gene into the silent s1 locus.

The LSAP2 expression cassette has been introduced into the s1 locus of mutant 2353cl2; see RMgm-4067. This mutant expresses P. falciparum TRAP under control of the uis4 promoter and GFP-luciferase. Both expression cassettes are introduced into the silent 230p locus. In addition this line is a GIMO line since it contains the positive/negative selectable  marker cassette (yfcu/hdhfr) in the silent s1 locus (to be able to introduce additional transgenes in the s1 locus)

Protein (function)

Phenotype
Antigen expression by chimeric parasites was confirmed by immunofluorescence staining (IFA) of sporozoites with serum from mice vaccinated with single antigens PfTRAP and PfLSAP2.

From the abstract:

Cell mediated protection from liver-stage malaria is reliant on a sufficient number of antigen specific T cells reaching the liver during the time that parasites are present. A single vaccine expressing two antigens could potentially increase both the size and breadth of antigen specific response, while halving vaccine production cost. In this study we investigated combining two liver stage antigens PfLSA1 and PfLSAP2, and investigated induction of protective efficacy by co-administration of single-antigen vectors or vaccination with dual-antigen vectors, using simian Adenovirus and Modified Vaccinia Ankara Virus vectors. Efficacy of these vaccines was assessed in mouse malaria challenge models using chimeric P. berghei parasites expressing the relevant Pf antigens and challenging mice at the peak of T cell response. Vaccination with a combination of the single-antigen vectors expressing PfLSA1 or PfLSAP2 was shown to improve protective efficacy compared to vaccination with each single antigen vector alone. Vaccination with dual-antigen vectors expressing both PfLSA1 and PfLSAP2 resulted in responses to both antigens, particularly in outbred mice, and most importantly efficacy was equivalent to vaccination with a mixture of single-antigen vectors

Additional information

Double Additional Gene (DAGs) chimeric parasites were generated as previously described (38) by using a single additional gene (SAG) as the background parent line and stably inserting the additional P.falciparum gene into the neutral s1 gene locus in chromosome 12 through double-crossover recombination using a 2-step “gene insertion/marker out” (GIMO) transfection protocol.
In the first step, we deleted the Pbs1 CDS and replaced it with a positive-negative selectable marker to create a Pbs1 deletion GIMO line from the parent line. In order to do this, we generated the plasmid construct, based on the standard GIMO DNA construct pL0034, which contains a positive-negative (hdhfr::yfcu) SM cassette and was used to insert both the Pbs1 5′ and 3′ gene targeting regions (TRs). The linear pL1928 DNA construct was introduced into parent plasmid by using standard methods of transfection. Transfected parasites were selected in mice through addition of pyrimethamine in the drinking water. Transfected parasites were cloned by limiting dilution, resulting in the PbANKA-PfAg+PbΔs1 GIMO line.

Other mutant


  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: Plasmodium
Gene Model of Parasite PF3D7_1335900
Gene Model P. falciparum ortholog PF3D7_1335900
Gene productthrombospondin-related anonymous protein | sporozoite surface protein 2
Gene product: Alternative nameTRAP; SSP2
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasiteNo selectable marker
Promoter of the selectable markerNo
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationDouble Additional Gene (DAGs) chimeric parasites were generated as previously described (38) by using a single additional gene (SAG) as the background parent line and stably inserting the additional P.falciparum gene into the neutral s1 gene locus in chromosome 12 through double-crossover recombination using a 2-step “gene insertion/marker out” (GIMO) transfection protocol.
In the first step, we deleted the Pbs1 CDS and replaced it with a positive-negative selectable marker to create a Pbs1 deletion GIMO line from the parent line. In order to do this, we generated the plasmid construct, based on the standard GIMO DNA construct pL0034, which contains a positive-negative (hdhfr::yfcu) SM cassette and was used to insert both the Pbs1 5′ and 3′ gene targeting regions (TRs). The linear pL1928 DNA construct was introduced into parent plasmid by using standard methods of transfection. Transfected parasites were selected in mice through addition of pyrimethamine in the drinking water. Transfected parasites were cloned by limiting dilution, resulting in the PbANKA-PfAg+PbΔs1 GIMO line.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0501200
Gene Model P. falciparum ortholog Not available
Gene productearly transcribed membrane protein up-regulated in infective sporozoites
Gene product: Alternative nameETRAMP10.3; UIS4
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0501200
Gene productearly transcribed membrane protein up-regulated in infective sporozoites
Gene product: Alternative nameETRAMP10.3
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP-Luciferase
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasiteNo selectable marker
Promoter of the selectable markerNo
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationDouble Additional Gene (DAGs) chimeric parasites were generated as previously described (38) by using a single additional gene (SAG) as the background parent line and stably inserting the additional P.falciparum gene into the neutral s1 gene locus in chromosome 12 through double-crossover recombination using a 2-step “gene insertion/marker out” (GIMO) transfection protocol.
In the first step, we deleted the Pbs1 CDS and replaced it with a positive-negative selectable marker to create a Pbs1 deletion GIMO line from the parent line. In order to do this, we generated the plasmid construct, based on the standard GIMO DNA construct pL0034, which contains a positive-negative (hdhfr::yfcu) SM cassette and was used to insert both the Pbs1 5′ and 3′ gene targeting regions (TRs). The linear pL1928 DNA construct was introduced into parent plasmid by using standard methods of transfection. Transfected parasites were selected in mice through addition of pyrimethamine in the drinking water. Transfected parasites were cloned by limiting dilution, resulting in the PbANKA-PfAg+PbΔs1 GIMO line.
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1133300
Gene Model P. falciparum ortholog PF3D7_1357100
Gene productelongation factor 1-alpha
Gene product: Alternative nameeef1a
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0719300
Gene productbifunctional dihydrofolate reductase-thymidylate synthase, putative
Gene product: Alternative namedhfr/ts
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_0306000
Gene product6-cysteine protein
Gene product: Alternative name230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: Plasmodium
Gene Model of Parasite PF3D7_0202100
Gene Model P. falciparum ortholog PF3D7_0202100
Gene productliver stage associated protein 2 | Plasmodium exported protein (PHISTc), unknown function
Gene product: Alternative nameLSAP2
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Click to view information
Click to hide information
pL2044
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modification
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_0501200
Gene Model P. falciparum ortholog Not available
Gene productearly transcribed membrane protein up-regulated in infective sporozoites
Gene product: Alternative nameETRAMP10.3; UIS4
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0501200
Gene productearly transcribed membrane protein up-regulated in infective sporozoites
Gene product: Alternative nameETRAMP10.3; UIS4
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PBANKA_1206800
Gene productzinc finger (CCCH type) protein, putative
Gene product: Alternative nameS1
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4