RMgmDB - Rodent Malaria genetically modified Parasites

Back to search results

Summary

RMgm-1356
Malaria parasiteP. berghei
Genotype
TaggedGene model (rodent): PBANKA_1233200; Gene model (P.falciparum): PF3D7_0518400; Gene product: cyclin, putative (P-Type Cyclin CYC3; CYC3)
Name tag: GFP
Phenotype Asexual bloodstage; Gametocyte/Gamete; Fertilization and ookinete; Oocyst; Sporozoite;
Last modified: 5 April 2016, 09:57
  *RMgm-1356
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging
Reference (PubMed-PMID number) Reference 1 (PMID number) : 26565797
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA 2.34
Other information parent lineP. berghei ANKA 2.34 is a cloned, gametocyte producer line of the ANKA strain (PubMed: PMID: 15137943).
The mutant parasite was generated by
Name PI/ResearcherRoques M; Tewari R
Name Group/DepartmentSchool of Life Sciences, Queens Medical Centre
Name InstituteUniversity of Nottingham
CityNottingham
CountryUK
Name of the mutant parasite
RMgm numberRMgm-1356
Principal nameCYC3-GFP
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageLive imaging of parasites revealed CYC3-GFP presence throughout the parasite cell body with a predominantly cytosolic localisation at most of the key Plasmodium life cycle stages examined (trophozoite, male and female gametocyte, zygote, ookinete, oocyst and salivary gland sporozoite). Deconvolution fluorescence imaging showed that CYC3-GFP was uniformly present throughout both the cytoplasm and the nucleus in trophozoites, gametocytes and ookinetes and noticeably enriched in the nucleus of ookinetes.
Gametocyte/GameteLive imaging of parasites revealed CYC3-GFP presence throughout the parasite cell body with a predominantly cytosolic localisation at most of the key Plasmodium life cycle stages examined (trophozoite, male and female gametocyte, zygote, ookinete, oocyst and salivary gland sporozoite). Deconvolution fluorescence imaging showed that CYC3-GFP was uniformly present throughout both the cytoplasm and the nucleus in trophozoites, gametocytes and ookinetes and noticeably enriched in the nucleus of ookinetes.
Fertilization and ookineteLive imaging of parasites revealed CYC3-GFP presence throughout the parasite cell body with a predominantly cytosolic localisation at most of the key Plasmodium life cycle stages examined (trophozoite, male and female gametocyte, zygote, ookinete, oocyst and salivary gland sporozoite). Deconvolution fluorescence imaging showed that CYC3-GFP was uniformly present throughout both the cytoplasm and the nucleus in trophozoites, gametocytes and ookinetes and noticeably enriched in the nucleus of ookinetes.
OocystLive imaging of parasites revealed CYC3-GFP presence throughout the parasite cell body with a predominantly cytosolic localisation at most of the key Plasmodium life cycle stages examined (trophozoite, male and female gametocyte, zygote, ookinete, oocyst and salivary gland sporozoite). Deconvolution fluorescence imaging showed that CYC3-GFP was uniformly present throughout both the cytoplasm and the nucleus in trophozoites, gametocytes and ookinetes and noticeably enriched in the nucleus of ookinetes.
Fluorescent imaging showed no detectable CYC3-GFP expression in oocysts at 5 and 7 dpi. Expression of CYC3-GFP was first observed at low levels in the majority of oocysts at 10 dpi with the highest expression detected at 14 dpi. Oocysts that had formed fully mature sporozoites showed the highest protein expression. After 14 dpi, a decrease was observed in CYC3-GFP expression in oocysts up to day 21pi.
SporozoiteLive imaging of parasites revealed CYC3-GFP presence throughout the parasite cell body with a predominantly cytosolic localisation at most of the key Plasmodium life cycle stages examined (trophozoite, male and female gametocyte, zygote, ookinete, oocyst and salivary gland sporozoite). Deconvolution fluorescence imaging showed that CYC3-GFP was uniformly present throughout both the cytoplasm and the nucleus in trophozoites, gametocytes and ookinetes and noticeably enriched in the nucleus of ookinetes.
Fluorescent imaging showed no detectable CYC3-GFP expression in oocysts at 5 and 7 dpi. Expression of CYC3-GFP was first observed at low levels in the majority of oocysts at 10 dpi with the highest expression detected at 14 dpi. Oocysts that had formed fully mature sporozoites showed the highest protein expression. After 14 dpi, a decrease was observed in CYC3-GFP expression in oocysts up to day 21pi.
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant expresses a C-terminal GFP-tagged version of CYC3

Protein (function)
Plasmodium species encode only three identifiable cyclins–CYC1, CYC3 and CYC4. A P. falciparum gene (encoded by PF3D7_1227500) annotated as PfCYC2 did not show a significant match to any of the cyclin-specific HMMs built during these analyses (even at extremely liberal thresholds), nor to the domains built by PFam. This protein was originally identified as a cyclin on the basis of a very limited similarity to a cyclin A from the sea star Patiria (Asterina) pectinifera (13% identity across alignable length), but it lacks key alignable residues across most of the cyclin box and has no detectable cyclin-like function in biochemical assays. These data strongly suggest that CYC2 is not a true cyclin.

The Plasmodium cyclin repertoire is highly unusual in that it entirely lacks Group I, the largest group of cyclins. This group contains most canonical cyclin families that regulate specific cell cycle transitions with their CDK partners: Cyclin D-CDK4/6 for G1 progression, Cyclin E-CDK2 for the G1/S transition, Cyclin A-CDK2 for S phase progression and CyclinA/B-CDK1 for mitosis, although in fission yeast, all cell cycle transitions are driven by a single Cyclin B/CDK complex (CDC13/CDC2). In keeping with this key role and previous analyses, Group I cyclins were found in all non-apicomplexan species examined, including the alveolate Tetrahymena thermophila. However, none of the apicomplexan species examined contained Group I cyclins, except Cryptosporidium, which was found to encode three Group I cyclins of indeterminate family, suggesting that there has been a loss of Group I cyclins during the evolution of apicomplexan lineages. Plasmodium species encode only one cyclin, CYC3, from the P family (Group II) and two Group III cyclins from families H and L. The cyclin P family is not found in animals, but includes many plant cyclins and Pho80 in budding yeast, which link nutritional sensing to cell cycle progression. In contrast, both H and L families are associated with transcription: the CDK7/Cyclin H/MAT1 complex functions as a Cdk-activating kinase in cell cycle regulation and as a modulator of the general transcription factor TFIIH. Similarly, CDK11-Cyclin L complex in fission yeast regulates the formation of the Mediator complex, a coactivator of RNA polymerase II transcription. 

Phenotype
Analyses of mutant lacking CYC3 (RMgm-1355, RMgm-1301) showed reduced oocyst and sporozoite formation. Aberrant oocyst formation

CYC3-GFP parasites were able to complete the full life cycle with no detectable phenotype observed from tagging with GFP including oocyst development at 14 days post infection (dpi) in mosquitoes. Live imaging of parasites revealed CYC3-GFP presence throughout the parasite cell body with a predominantly cytosolic localisation at most of the key Plasmodium life cycle stages examined (trophozoite, male and female gametocyte, zygote, ookinete, oocyst and salivary gland sporozoite). Deconvolution fluorescence imaging showed that CYC3-GFP was uniformly present throughout both the cytoplasm and the nucleus in trophozoites, gametocytes and ookinetes and noticeably enriched in the nucleus of ookinetes.
Fluorescent imaging showed no detectable CYC3-GFP expression in oocysts at 5 and 7 dpi. Expression of CYC3-GFP was first observed at low levels in the majority of oocysts at 10 dpi with the highest expression detected at 14 dpi. Oocysts that had formed fully mature sporozoites showed the highest protein expression. After 14 dpi, a decrease was observed in CYC3-GFP expression in oocysts up to day 21pi.

Additional information
Quantitative RT-PCR (qRT-PCR) was used to investigate the RNA levels of cyc1, 3 and 4 in six stages of the wild-type parasite life cycle. The transcription profiles showed expression of the cyclins throughout parasite development with the highest RNA levels for all three cyclins found in gametocytes (both non-activated and activated) and schizonts (particularly cyc4). The cyc3 RNA level was highest in non-activated gametocytes, whereas for cyc1 and cyc4, the levels were highest in activated gametocytes.

Other mutants
See RMgm-1356 for a mutant expressing a C-terminal GFP-tagged version of CYC3
See RMgm-1301 for an independent mutant lacking expression of CYC3


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1233200
Gene Model P. falciparum ortholog PF3D7_0518400
Gene productcyclin, putative
Gene product: Alternative nameP-Type Cyclin CYC3; CYC3
Details of the genetic modification
Name of the tagGFP
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/construct(Linear) plasmid single cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markerpbdhfr
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modification
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6