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Details of the target gene |
Gene Model of Rodent Parasite |
PBANKA_1412600
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Gene Model P. falciparum ortholog |
PF3D7_1314200
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Gene product | telomerase reverse transcriptase |
Gene product: Alternative name | |
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Details of the genetic modification |
Inducable system used | No |
Additional remarks inducable system |
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Type of plasmid/construct used | (Linear) plasmid double cross-over |
PlasmoGEM (Sanger) construct/vector used | No |
Modified PlasmoGEM construct/vector used | No
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Plasmid/construct map |
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Plasmid/construct sequence |
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Restriction sites to linearize plasmid |
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Partial or complete disruption of the gene | Complete |
Additional remarks partial/complete disruption |
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Selectable marker used to select the mutant parasite | tgdhfr |
Promoter of the selectable marker | pbdhfr |
Selection (positive) procedure | pyrimethamine |
Selection (negative) procedure | No |
Additional remarks genetic modification | Two adjacent incomplete gene models have been identified in the genome of P. berghei (www.GeneDB.org) that encode tert genes: PBANKA_141260 (5691 bp) and PBANKA_141270 (1305 bp), that both share homology with the single copy tert genes of P. falciparum and P. chabaudi (PCHAS_141450; 6753 bp). The P. chabaudi tert gene was subsequently used as a reference for assembling the complete Pbtert gene. Amplification of the predicted gap between the two Pbtert gene models using primers specific to the adjacent tremities of both gene models revealed a sequence duplication of 57 nt, which may explain the failure of correct assembly of Pbtert which has a total size of 6939 bp. The complete Pbtert gene ishared 77%, 83% and 43% identity with the predicted tert genes of P. yoelii (17X), P. chabaudi and P. falciparum, respectively. |
Additional remarks selection procedure | |
Primer information: Primers used for amplification of the target sequences
Primer information: Primers used for amplification of the target sequences
Sequence Primer 1 | AAAggtaccATTTCTTTTATCCTACAC |
Additional information primer 1 | |
Sequence Primer 2 | AAAaagcttTGTTTTTTAAGTAACTAC |
Additional information primer 2 | |
Sequence Primer 3 | AAAgaattcCTATCAGATCTATTGAAT |
Additional information primer 3 | |
Sequence Primer 4 | AAAtctagaTAATAATTTGCTGAACAG |
Additional information primer 4 | |
Sequence Primer 5 | |
Additional information primer 5 | |
Sequence Primer 6 | |
Additional information primer 6 | |
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