RMgmDB - Rodent Malaria genetically modified Parasites

Summary

RMgm-1000
Malaria parasiteP. berghei
Genotype
MutatedGene model (rodent): PBANKA_1008200; Gene model (P.falciparum): PF3D7_1436600; Gene product: cGMP-dependent protein kinase (PKG)
Details mutation: a mutated pkg in which the threonine gatekeeper residue ((T619Q) is mutated to glutamine
TaggedGene model (rodent): PBANKA_1008200; Gene model (P.falciparum): PF3D7_1436600; Gene product: cGMP-dependent protein kinase (PKG)
Name tag: triple-HA
Phenotype Fertilization and ookinete;
Last modified: 16 March 2014, 15:50
  *RMgm-1000
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene mutation, Gene tagging
Reference (PubMed-PMID number) Reference 1 (PMID number) : 24594931
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. berghei
Parent strain/lineP. berghei ANKA
Name parent line/clone P. berghei ANKA 2.34
Other information parent lineP. berghei ANKA 2.34 is a cloned, gametocyte producer line of the ANKA strain (PubMed: PMID: 15137943).
The mutant parasite was generated by
Name PI/ResearcherBrochet, M; Billker, O.
Name Group/DepartmentWellcome Trust Sanger Institute, Hinxton
Name InstituteWellcome Trust Sanger Institute, Hinxton
CityHinxton, Cambridge
CountryUK
Name of the mutant parasite
RMgm numberRMgm-1000
Principal namePKG(T619Q-HA)
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationNo
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteMutant parasites show normal development throughout the complete life cycle. Expression of PKG(T619Q-HA)in ookinetes
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageNot different from wild type
Additional remarks phenotype

Mutant/mutation
In this mutant the wild type pkg gene is replaced with a modified allele pkg (T619Q-HA), in which the threonine gatekeeper residue was mutated to a larger glutamine residue together with a C-terminal triple HA epitope tag. The mutant does not contain a selectable marker. The positive/negative selectable marker cassette has been removed by negative selection with 5-FC.

Protein (function)
Cyclic GMP-dependent protein kinases (PKGs) are the major mediators of the cGMP signal transduction pathway and regulate a variety of physiological effects. PKG is is a serinethreonine kinase that transfers the γ-phosphate of ATP, in a cGMP-dependent manner, to a variety of substrate proteins.

Work in Toxoplasma gondii and Eimeria tenella, coccidian parasites that are related to Plasmodium, identified PKG as the primary target for two structurally distinct anticoccidal compounds, the trisubstituted pyrrole compound 1 (C1) and the imidazopyridine-based inhibitor compound 2 (C2). Both compounds achieve high selectivity over PKG of humans by exploiting an unusually small gatekeeper residue within the active site of all apicomplexan PKG enzymes. Mutating the threonine gatekeeper residue of apicomplexan PKG to a larger residue renders parasites resistant to both inhibitors.

This leads to the hypothesis that a major function for PKG is to control intracellular Ca2+ levels in malaria parasites, through the regulation of phosphoinositide metabolism by lipid kinases. This study presents evidence in support of this idea by showing in three life cycle stages and two Plasmodium species that activation of PKG is critically required to regulate cytosolic Ca2+ levels. PKG emerges as a universal regulator that controls ookinete gliding, gametocyte activation, and schizont rupture.

Phenotype
Mutant parasites show normal development throughout the complete life cycle. Expression of PKG(T619Q-HA) in ookinetes

Additional information
See also mutant RMgm-999: A mutant expressing a C-terminal HA-tagged version of PKG

Gliding motility of ookinetes expressing PKG-HA was strongly inhibited by the inhibitor C2 (imidazopyridine-based inhibitor compound 2) with a half-maximal effect of ~100 nM. Expression of PKG(T619Q-HA), in contrast, conferred complete resistance to C2 up to at least 5 mM, demonstrating that PKG is the critical target for C2 and essential for ookinete gliding.

Inhibition of gliding motility by C2 was as potent as disrupting cGMP production genetically by deleting guanylyl cyclase beta (GCβ; PBANKA_113670). In contrast,  interfering with degradation of cyclic nucleotides through complete deletion of phosphodiesterase delta, putative (PDEδ; PBANKA_133370)  had the opposite effect, resulting in a marked increase in average gliding speed

Other mutants
RMgm-999: A mutant expressing a C-terminal HA-tagged version of PKG
 


  Mutated: Mutant parasite with a mutated gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1008200
Gene Model P. falciparum ortholog PF3D7_1436600
Gene productcGMP-dependent protein kinase
Gene product: Alternative namePKG
Details of the genetic modification
Short description of the mutationa mutated pkg in which the threonine gatekeeper residue ((T619Q) is mutated to glutamine
Inducable system usedNo
Short description of the conditional mutagenesisNot available
Additional remarks inducable system
Type of plasmid/constructPlasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedYes
Name of PlasmoGEM construct/vector-
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationNo details are provided for the PlasmoGEM vector used

The mutant does not contain a selectable marker. The positive/negative selectable marker cassette has been removed by negative selection with 5-FC.

Point mutations were introduced with a two-step strategy using l Red-ET recombineering in E. coli. The first step involved the insertion by homologous recombination of a Zeocin-resistance/Phe-sensitivity cassette surrounded by sequences 5' and 3' of the codon of interest amplified using primer pairs specific for the gene of interest (GOI): goi-delF/goi-delR. Recombinant bacteria were then selected on Zeocin. After verification of the recombination event by PCR, a second round of recombination exchanged the Zeocin-resistance/Phe-sensitivity cassette with a PCR product containing the desired mutation surrounding the codon of interest amplified using goi-mutF/goi-mutR primer pairs. Bacteria were selected on YEG-Cl kanamycin plates. Mutations were confirmed by sequencing vectors isolated from colonies sensitive to Zeocin. Generation of knockout and tagging constructs was performed using sequential recombineering and gateway steps as previously described. Lambda red-ET recombineering was first used to introduce a bacterial selection marker amplified into the gDNA insert, such that the target gene is either deleted or prepared for 39-end tagging. The bacterial marker was then replaced with a selection cassette for P. berghei in a Gateway LR Clonase reaction in vitro. The modified library inserts were then released from the plasmid backbone using NotI and used to transfect P. berghei.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PBANKA_1008200
Gene Model P. falciparum ortholog PF3D7_1436600
Gene productcGMP-dependent protein kinase
Gene product: Alternative namePKG
Details of the genetic modification
Name of the tagtriple-HA
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/constructPlasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedYes
Name of PlasmoGEM construct/vector-
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modificationNo details are provided for the PlasmoGEM vector used

The mutant does not contain a selectable marker. The positive/negative selectable marker cassette has been removed by negative selection with 5-FC.
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6