RMgmDB - Rodent Malaria genetically modified Parasites

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Summary

RMgm-4839
Malaria parasiteP. chabaudi
Genotype
DisruptedGene model (rodent): PCHAS_1433600; Gene model (P.falciparum): PF3D7_1215900; Gene product: serpentine receptor 10, putative (SR10)
Phenotype Asexual bloodstage;
Last modified: 12 August 2020, 17:54
  *RMgm-4839
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene disruption
Reference (PubMed-PMID number) Reference 1 (PMID number) : 32488076
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. chabaudi
Parent strain/lineP. c.chabaudi AS
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherSubudhi AK, Pain A
Name Group/DepartmentPathogen Genomics Group, BESE Division
Name InstituteKing Abdullah University of Science and Technology (KAUST)
CityThuwal
CountryKingdom of Saudi Arabia
Name of the mutant parasite
RMgm numberRMgm-4839
Principal nameP. chabaudi sr10KO
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageAll infections of wild type and sr10KO clones (sr10KOA and B) were highly synchronous (amplitude ± SE) for P. chabaudi wild type: 0.94 ± 0.02, P. chabaudi sr10KOA: 0.79 ± 0.02 and sr10KOB 0.93 ± 0.03). Period estimates for the proportion of parasites at early trophozoite stage suggest the intra-erythrocytic developmental cycle (IDC) duration of both sr10KO clones is ~2–3 h shorter (IDC duration 22.4 h) than the wild type (IDC duration 25.15; p < 0.0001).
Gametocyte/GameteNot tested
Fertilization and ookineteNot tested
OocystNot tested
SporozoiteNot tested
Liver stageNot tested
Additional remarks phenotype

Mutant/mutation
The mutant lacks expression of SR10

Protein (function)
Seven transmembrane domain-containing receptors/serpentine receptors/G protein-coupled receptors (GPCRs) are the largest and most diverse group of membrane receptors and participate in a variety of physiological functions. The P. falciparum proteome contains four serpentine receptor (SR) proteins; SR1, SR10, SR12, and SR2534. Of these, only Pfsr10 showed a 24 h expression rhythm. 
SR10 has been bioinformatically classified as a member of Class A serpentine receptors belonging to the hormonal receptor subclass based on the length of the N-terminal domain34 and classification by Inoue et al. SR10 is also the only receptor shared between malaria parasites and other apicomplexans and also with distantly related organisms such as Caenorhabditis elegans, Drosophila melanogaster, Gallus gallus, Mus musculus, Homo sapiens, and Arabidopsis thaliana (data retrieved from OrthoMCL DB), although it has not been linked to circadian clocks in these organisms.

Phenotype
All infections of wild type and sr10KO clones (sr10KOA and B) were highly synchronous (amplitude ± SE) for P. chabaudi wild type: 0.94 ± 0.02, P. chabaudi sr10KOA: 0.79 ± 0.02 and sr10KOB 0.93 ± 0.03). Period estimates for the proportion of parasites at early trophozoite stage suggest the intra-erythrocytic developmental cycle (IDC) duration of both sr10KO clones is ~2–3 h shorter (IDC duration 22.4 h) than the wild type (IDC duration 25.15; p < 0.0001). These results implicates sr10 in the control of developmental progression through the IDC.

Additional information
Evidence is presented that::
- Serpentine receptor 10 (SR10) has a 24 h transcriptional rhythm and disrupting it in rodent malaria parasites shortens the intra-erythrocytic developmental cycle (IDC) by 2-3 h
- SR10 affects rhythmic expression of spliceosome machinery

Other mutants


  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PCHAS_1433600
Gene Model P. falciparum ortholog PF3D7_1215900
Gene productserpentine receptor 10, putative
Gene product: Alternative nameSR10
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct used(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Partial or complete disruption of the geneComplete
Additional remarks partial/complete disruption
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modification
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6