RMgmDB - Rodent Malaria genetically modified Parasites

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Summary

RMgm-4449
Malaria parasiteP. yoelii
Genotype
DisruptedGene model (rodent): PY17X_1004400; Gene model (P.falciparum): PF3D7_0405300; Gene product: liver specific protein 2, putative (LISP2)
DisruptedGene model (rodent): PY17X_1123700; Gene model (P.falciparum): PF3D7_0623400; Gene product: MEI2-like RNA-binding protein, putative (PlasMei2)
Transgene
Transgene not Plasmodium: GFP-Luciferase
Promoter: Gene model: PBANKA_1133300; Gene model (P.falciparum): PF3D7_1357100; Gene product: elongation factor 1-alpha (eef1a)
3'UTR: Gene model: PBANKA_0719300; Gene product: bifunctional dihydrofolate reductase-thymidylate synthase, putative (dhfr/ts)
Replacement locus: Gene model: PY17X_0306600; Gene product: 6-cysteine protein (P230p)
Phenotype Liver stage;
Last modified: 18 May 2018, 13:26
  *RMgm-4449
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene disruption, Gene disruption, Introduction of a transgene
Reference (PubMed-PMID number) Reference 1 (PMID number) : 29440367
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. yoelii
Parent strain/lineP. y. yoelii 17XNL
Name parent line/clone RMgm-4448
Other information parent lineThe gene plasmei2 was deleted in a mutant (RMgm-4448) lacking the gene lisp2 and expressing GFP under the constitutive eef1a promoter. Mutant 4448 does not contain a drug-selectable marker
The mutant parasite was generated by
Name PI/ResearcherVaughan AM; Kappe SHI
Name Group/DepartmentCenter for Infectious Disease Research
Name InstituteCenter for Infectious Disease Research
CitySeattle
CountryWashington
Name of the mutant parasite
RMgm numberRMgm-4449
Principal namelisp2(-) plasmei2(-)
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stageNot different from wild type
Gametocyte/GameteNot different from wild type
Fertilization and ookineteNot different from wild type
OocystNot different from wild type
SporozoiteNot different from wild type
Liver stageThe P. yoelii lisp2− plasmei2− GAP exhibits complete late liver stage developmental arrest (see below for more details).
Additional remarks phenotype

Mutant/mutation
The mutant lacks expression of LISP2 and PLASMEI2 and expresses GFP under the control of the constitutive eef1a promoter.

Protein (function)
LISP2: The protein contains a predicted Plasmodium 6-cysteine motif. Several studies analysing expression of this protein in P. berghei provide evidence for specific expression in liver stages. The protein has been named LISP2 and sequestrin.
PLASMEI2: Mei2 is a member of the largest family of RNA binding proteins (RBPs) – those that contain a RNA recognition motif (RRM), a stretch of 70-90 amino acids that contain two consensus RNA-interacting motifs, RNP1 and RNP2. RRM-containing proteins are subdivided into ten separate families (RRM_1 thru RRM_10) based on shared amino acid identities between members of each family and Mei2 contains a C-terminal RRM_2, thought to be unique to fungi and plants.
Plasmodium contains a single Mei2-like gene (from herein referred to as PlasMei2). In the P. yoelii rodent malaria model, Plasmei2 is only expressed during liver stage development and is localized in distinct cytoplasmic structures reminiscent of P-granules

Phenotype
The P. yoelii lisp2− plasmei2− GAP exhibits complete late liver stage developmental arrest.

Additional information
The P. yoelii lisp2− plasmei2− GAP exhibits complete late liver stage developmental arrest.

We  compared late liver stage development of the lisp2− plasmei2− dual gene deletion parasite with lisp2− and plasmei2− single gene deletion parasites as well as wild-type parasites. Groups of Swiss Webster (SW) mice were challenged i.v. with 50,000 sporozoites of each strain and liver stage developmental progression was measured based on luciferase activity at 43 h, a time point late in liver stage development but before the complete maturation and liver stage-to-blood stage transition of wild-type parasites. Parasite development, based on luciferase expression was indistinguishable between single and dual gene knockout parasite strains and wild-type parasites, suggesting that all three GAP progress to late liver stage development. To further assess the phenotype of liver stage development, parasites were visualized by indirect immunofluorescence assay (IFA) at 43 h of liver stage development, using antibodies recognizing the PVM protein Hep17 and the endoplasmic reticulum protein BiP. Liver stages of GAP developed to late schizogony and appeared similar to the wild type based on expression patterns of Hep17. However, the plasmei2− liver stages showed a DNA segregation phenotype and aberrant BiP expression, and this phenotype was also observed in the lisp2− plasmei2− liver stages.

To quantify liver stage growth of the gene knockout parasite lines, liver stage size was determined at 43 h in comparison to that of the wild type, and no significant differences were seen among all analyzed strains. Thus, P. yoelii lisp2− plasmei2− GAP retains the late-liver stage arresting phenotype of the single gene deletion parasites and phenotypically resembles the plasmei2− single gene knockout. To determine whether the lisp2− plasmei2− GAP persisted in the liver, we measured liver stage luciferase activity of the lisp2− plasmei2− GAP over time after sporozoite inoculation in C57BL/6 mice. At 72 h, both lisp2− plasmei2− GAP and fabb/f− GAP luciferase activities had significantly decreased, with lisp2− plasmei2− GAP activity at background levels, whereas fabb/f− GAP luciferase activity was still significantly higher than background. This suggests that the fabb/f− GAP persists for longer than the lisp2− plasmei2− GAP. At 96 h, both GAP had luciferase activities comparable to background.

As we had observed the lowest frequency of breakthrough infections among single gene knockouts in the plasmei2− parasite, we next determined if comparable high doses of lisp2− plasmei2− GAP would lead to breakthrough infection. We thus performed challenges i.v. with 200,000 or 500,000 lisp2− plasmei2− sporozoites in cohorts of highly susceptible BALB/cByJ mice for each dose. We did not observe any breakthrough to blood stage infection (0/29 for 200,000 and 0/26 for 500,000. This finding shows that the P. yoelii lisp2− plasmei2− gene knockout combination constitutes a synthetic lethal phenotype in which two sublethal single gene deletions synergize to cause a completely penetrant lethal phenotype. In consequence, the lisp2− plasmei2− GAP is completely attenuated at late liver stage.

Other mutants


  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PY17X_1004400
Gene Model P. falciparum ortholog PF3D7_0405300
Gene productliver specific protein 2, putative
Gene product: Alternative nameLISP2
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct usedCRISPR/Cas9 construct: integration through double strand break repair
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Partial or complete disruption of the geneComplete
Additional remarks partial/complete disruption
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modification
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Disrupted: Mutant parasite with a disrupted gene
Details of the target gene
Gene Model of Rodent Parasite PY17X_1123700
Gene Model P. falciparum ortholog PF3D7_0623400
Gene productMEI2-like RNA-binding protein, putative
Gene product: Alternative namePlasMei2
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct used(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Partial or complete disruption of the geneComplete
Additional remarks partial/complete disruption
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modification
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6

  Transgene: Mutant parasite expressing a transgene
Type and details of transgene
Is the transgene Plasmodium derived Transgene: not Plasmodium
Transgene nameGFP-Luciferase
Details of the genetic modification
Inducable system usedNo
Additional remarks inducable system
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr/yfcu
Promoter of the selectable markereef1a
Selection (positive) procedureNo
Selection (negative) procedure5-fluorocytosine (5-FC)
Additional remarks genetic modification
Additional remarks selection procedure
Other details transgene
Promoter
Gene Model of Parasite PBANKA_1133300
Gene Model P. falciparum ortholog PF3D7_1357100
Gene productelongation factor 1-alpha
Gene product: Alternative nameeef1a
Primer information details of the primers used for amplification of the promoter sequence  Click to view information
Primer information details of the primers used for amplification of the promoter sequence  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
3'-UTR
Gene Model of Parasite PBANKA_0719300
Gene productbifunctional dihydrofolate reductase-thymidylate synthase, putative
Gene product: Alternative namedhfr/ts
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to view information
Primer information details of the primers used for amplification the 3'-UTR sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Insertion/Replacement locus
Replacement / InsertionReplacement locus
Gene Model of Parasite PY17X_0306600
Gene product6-cysteine protein
Gene product: Alternative nameP230p
Primer information details of the primers used for amplification of the target sequences  Click to view information
Primer information details of the primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4