RMgmDB - Rodent Malaria genetically modified Parasites

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Summary

RMgm-4314
Malaria parasiteP. yoelii
Genotype
TaggedGene model (rodent): PY17X_1366000; Gene model (P.falciparum): PF3D7_1347500; Gene product: DNA/RNA-binding protein Alba 4 (ALBA4)
Name tag: GFPmut2
Phenotype Asexual bloodstage; Gametocyte/Gamete; Oocyst; Sporozoite; Liver stage;
Last modified: 29 August 2017, 11:39
  *RMgm-4314
Successful modificationThe parasite was generated by the genetic modification
The mutant contains the following genetic modification(s) Gene tagging
Reference (PubMed-PMID number) Reference 1 (PMID number) : 28787542
MR4 number
Parent parasite used to introduce the genetic modification
Rodent Malaria ParasiteP. yoelii
Parent strain/lineP. y. yoelii 17XNL
Name parent line/clone Not applicable
Other information parent line
The mutant parasite was generated by
Name PI/ResearcherMuñoz EE, Lindner SE
Name Group/DepartmentDepartment of Biochemistry and Molecular Biology, Center for Malaria Research
Name InstitutePennsylvania State University
CityUniversity Park, PA
CountryUSA
Name of the mutant parasite
RMgm numberRMgm-4314
Principal nameALBA4::GFP
Alternative name
Standardized name
Is the mutant parasite cloned after genetic modificationYes
Phenotype
Asexual blood stagePyALBA4 is expressed throughout asexual blood stage development. PyALBA4 traffics to cytosolic puncta in ring, trophozoite, and schizont stages, and can be found as nuclear adjacent foci, near the cell periphery, and at all points between.
Gametocyte/GameteIn gametocytes PyALBA4 is abundantly expressed, and can be found both diffusely and in puncta in the cytoplasm in both male and female gametocytes.
Fertilization and ookineteNot tested
OocystPyALBA4 is expressed diffusely throughout early oocysts (Day 3) but then much of it is directed to puncta within developing sporozoites, with the remainder persisting within sporoblasts/cytoplasmic islands.
SporozoiteSporozoites liberated from the oocyst (Day 10) retain only a few puncta of PyALBA4, which are largely nuclear adjacent. Salivary gland sporozoites (Day 14) contain far more PyALBA4 granules, which extend from near the nucleus out to both ends of the parasite.
Liver stagePyALBA4 expression/localisation shifts from a largely diffuse expression pattern in mid-liver stage (24 hours) to increasingly smaller puncta during late (48 hours) and very late (52 hours) liver stage.
Additional remarks phenotype

Mutant/mutation
The mutant expresses a C-terminal GFPmut2-tagged version of ALBA4.

Protein (function)
ALBA proteins are evolutionarily conserved from Archaea and consistently have been found to bind to nucleic acids. Structurally, the ALBA domain resembles the IF3 C-terminal domain, which binds to the small subunit of the prokaryotic ribosome. Together, this strategy provides a straightforward mechanism for ALBA proteins to tether nucleic acids to the ribosome. Plasmodium spp. contain at least four ALBA-domain containing proteins, and have been shown to bind both DNA and RNA. Of these ALBA proteins, ALBA4 is specific to the Apicomplexan lineage and its Chromerid ancestor (40-50%; identity / 60-65% similarity).

Phenotype
See mutant RMgm-4313 for a mutant lacking expression of ALBA4.
Fusion of GFPmut2 to PyALBA4 did not result in any detectable morphological or phenotypical effects compared to the WT-GFP parasite line at any point of the life cycle.
PyALBA4 is expressed throughout asexual blood stage development. PyALBA4 traffics to cytosolic puncta in ring, trophozoite, and schizont stages, and can be found as nuclear adjacent foci, near the cell periphery, and at all points between.
In gametocytes PyALBA4 is abundantly expressed, and can be found both diffusely and in puncta in the cytoplasm in both male and female gametocytes.
PyALBA4 is expressed diffusely throughout early oocysts (Day 3) but then much of it is directed to puncta within developing sporozoites, with the remainder persisting within sporoblasts/cytoplasmic islands.
Sporozoites liberated from the oocyst (Day 10) retain only a few puncta of PyALBA4, which are largely nuclear adjacent. Salivary gland sporozoites (Day 14) contain far more PyALBA4 granules, which extend from near the nucleus out to both ends of the parasite.
PyALBA4 expression/localisation shifts from a largely diffuse expression pattern in mid-liver stage (24 hours) to increasingly smaller puncta during late (48 hours) and very late (52 hours) liver stage.

Additional information
I
mmunoprecipitation studies were performed using GFP-tagged ALBA4 identifying a number of proteins as putative interacting partners of ALBA4, for example Musashi, Bruno, GBP2, SR1, GAPDH, Aldolase, PABP, a thioredoxin peroxidase, EF1alpha, ribosomal proteins and ALBA1, 2, 3, and 4. The authors conclude: 'the interactions with  ribosome-associated factors are in agreement with previous work that showed that the ALBA domain resembles the IF3-C domain that interacts with the small subunit of the ribosome, and other work that showed that a a member of this complex in yeast (ScDHH1) associates directly with the ribosome.

Other mutants
Mutant RMgm-4313: a mutant lacking expression of ALBA4


  Tagged: Mutant parasite with a tagged gene
Details of the target gene
Gene Model of Rodent Parasite PY17X_1366000
Gene Model P. falciparum ortholog PF3D7_1347500
Gene productDNA/RNA-binding protein Alba 4
Gene product: Alternative nameALBA4
Details of the genetic modification
Name of the tagGFPmut2
Details of taggingC-terminal
Additional remarks: tagging
Commercial source of tag-antibodies
Type of plasmid/construct(Linear) plasmid double cross-over
PlasmoGEM (Sanger) construct/vector usedNo
Modified PlasmoGEM construct/vector usedNo
Plasmid/construct map
Plasmid/construct sequence
Restriction sites to linearize plasmid
Selectable marker used to select the mutant parasitehdhfr
Promoter of the selectable markereef1a
Selection (positive) procedurepyrimethamine
Selection (negative) procedureNo
Additional remarks genetic modification
Additional remarks selection procedure
Primer information: Primers used for amplification of the target sequences  Click to view information
Primer information: Primers used for amplification of the target sequences  Click to hide information
Sequence Primer 1
Additional information primer 1
Sequence Primer 2
Additional information primer 2
Sequence Primer 3
Additional information primer 3
Sequence Primer 4
Additional information primer 4
Sequence Primer 5
Additional information primer 5
Sequence Primer 6
Additional information primer 6